Phyre 2 alignment of A1A4S6 with c2dfkA

Job Description A1A4S6
Confidence 97.73% Date Wed May 9 18:01:49 BST 2012

Rank 331 Aligned Residues 301

% Identity 9% Template c2dfkA_

PDB info PDB header:cell cycle Chain: A: PDB Molecule:collybistin ii; PDBTitle: crystal structure of the cdc42-collybistin ii complex

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	L	I	K	P	.	.	L	E	K
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence	N	R	D	Q	M	R	A	N	V	I	N	E	I	M	S	T	E	R	H	Y	I	K	H	L	K	D	I	C	E	G	Y	L	K	Q	C	R	K	R	R	D	M	F	S	D	E	Q	L	K	V	I	F	G	N	I	E	D	I	Y	R	F	Q	M	G	F	V	R	D	L	E	K	Q	Y	N	N	D	D	P	H	L	S
Template Known Secondary structure																															T								T	T	T											T	T																					S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	R	K	E	Q	L	G	A	V	K	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q	E	R	K	K	F	E	F	V	E
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	I	G	P	C	F	L	E	H	Q	D	G	F	W	I	Y	S	E	Y	C	N	N	H	L	D	A	C	M	E	L	S	K	L	M	K	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	Q	H	F	F	E	A	C	R	L	L	Q	Q	M	I	D	I	A	I	D	G
Template Known Secondary structure									T	T	T	G	G	G																				T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T			S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	199	200	.	.	.	.	.	.	.	.	.	210	.														.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	M	L	S	F	F	Q	G	M	F	T	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	A	S	Q
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	L	L	T	P	V	Q	K	I	C	K	Y	P	L	Q	L	A	E	L	L	K	Y	T	A	Q	D	H	S	D	Y	R	Y	V	A	A	A	L	A	V	M	R	N	V	T	Q	Q	I	N	E	R	K	R	R	L	E	N	I	D	K	I	A	Q	W	Q	A	S	V	L	D	W	E	G	D	D	I	L	D	R	S	S
Template Known Secondary structure			T																			T	S		T	T	S	T	T																											T											S	B	T			S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.								.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence	F	T	A	E	G	Y	L	Y	V	Q	E	K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H	T	D	S	I	D	R	.	.	.	.	.	.	.	R	F	C	F
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence									.	.	.																									.	.																																	.	.	.	.	.	.	.
Template Conservation									.	.	.																									.	.
Template Sequence	E	L	I	Y	T	G	E	M	.	.	.	A	W	I	Y	Q	P	Y	G	R	N	Q	Q	R	V	F	F	L	F	D	H	Q	M	V	L	.	.	C	K	K	D	L	I	R	R	D	I	L	Y	Y	K	G	R	I	D	M	D	K	Y	E	V	I	D	I	E	D	G	R	D	D	D	F	N	V	S	M	K	N	A	F
Template Known Secondary structure									.	.	.				S	S	T	T												T	T					.	.					S	S		T	T										G	G	G								S				S	S	S					S	S
Template Predicted Secondary structure									.	.	.																									.	.
Template SS confidence
	265	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S	E	E	E	R	K	Q	W	L	E	A	L	G
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence	K	L	H	N	K	E	.	T	E	E	V	H	L	F	F	A	K	K	L	E	E	K	I	R	W	L	R	A	F	R
Template Known Secondary structure					S	S	.	S	S								S	S
Template Predicted Secondary structure							.
Template SS confidence
	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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