Job Description A1A4S6 Confidence 98.51% Date Wed May 9 18:01:49 BST 2012 Rank 307 Aligned Residues 326 % Identity 11% Template c1x86A_ PDB info PDB header:signaling protein/membrane protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 12; PDBTitle: crystal structure of the dh/ph domains of leukemia-associated rhogef2 in complex with rhoa Resolution 3.22 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	E	L	E	R	T	N	K	F	I	K	E	L	I	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A
Query Conservation
Alig confidence																																																			.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		R	E	V	L	L	G	L	K	P	C	E	I	K	R	Q	E	V	I	N	E	L	F	Y	T	E	R	A	H	V	R	T	L	K	V	L	D	Q	V	F	Y	Q	R	V	S	R	E	G	I	L	.	.	.	.	S	P	S	E	L	R	K	I	F	S	N	L	E	D	I	L	Q	L	H	I	G	L	N	E	Q	M	K
Template Known Secondary structure						T	T	S		T	T																													T								S		S	.	.	.	.										T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		775	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.					.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																									.																											.	.
Query SS confidence																									.																											.	.
Query Sequence		L	S	V	T	E	T	L	I	K	P	L	E	K	F	R	K	E	Q	L	G	A	V	K	.	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	.	.	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V
Query Conservation																									.																											.	.
Alig confidence																									.																											.	.
Template Conservation
Template Sequence		A	V	R	K	R	N	E	T	S	V	I	D	Q	I	G	E	D	L	L	T	W	F	S	G	P	G	E	E	K	L	K	H	A	A	A	T	F	C	S	N	Q	P	F	A	L	E	M	I	K	S	R	Q	K	K	D	S	R	F	Q	T	F	V	Q	D	A	E	S	N	P	L	C	R	R	L	Q	L	K	D	I	I
Template Known Secondary structure								S	S	S	S													S																	T																											T	S	G	G	G	T	T							T
Template Predicted Secondary structure
Template SS confidence
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	K	L	Q	E	I	Q	E	R	K	K	F	E	F	V	E	P	M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R
Query Conservation
Alig confidence							.																.	.	.	.	.																																		.
Template Conservation							.																.	.	.	.	.																																		.
Template Sequence		P	T	Q	M	Q	.	R	L	T	K	Y	P	L	L	L	D	N	I	A	K	Y	.	.	.	.	.	T	E	W	P	T	E	R	E	K	V	K	K	A	A	D	H	C	R	Q	I	L	N	F	V	N	Q	A	V	K	E	A	E	N	.	K	Q	R	L	E	D	Y	Q	R	R	L	D	T	S	S	L	K	L	S	E
Template Known Secondary structure		T					.															T	.	.	.	.	.																																		.										T				S	S			S	S	S
Template Predicted Secondary structure							.																.	.	.	.	.																																		.
Template SS confidence
		931	.	.	.	.		.	.	.	.	940	.	.	.	.	.	.	.	.	.	950						.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.		.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.
		263	.	.	.														.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		A	S	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	E	G	Y	L	Y	V	Q	E	K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	.	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																									.
Template Conservation																																	.	.	.	.	.
Template Sequence		Y	P	N	V	E	E	L	R	N	L	D	L	T	K	R	K	M	I	H	E	G	P	L	V	W	K	V	N	R	D	K	.	.	.	.	.	T	I	D	L	Y	T	L	L	L	E	D	I	L	V	L	L	Q	K	Q	D	D	R	L	V	L	R	C	H	S	T	F	S	P	V	I	K	L	S	T	V	L	V	R	Q
Template Known Secondary structure			G	G	G					S			G	G	G	S												S		T	T		.	.	.	.	.										S	S							B		S	S												S				T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		1004	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.						.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	S	I	D	R	R	F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S	E	E	E	R	K	Q	W	L	E	A	L	G
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		V	A	T	D	N	K	A	L	.	F	V	I	S	M	S	D	N	G	A	Q	I	Y	E	L	V	A	Q	T	V	S	E	K	T	V	W	Q	D	L	I	C
Template Known Secondary structure			S	S	S	T	T			.					B		S	S		B								S	S
Template Predicted Secondary structure										.
Template SS confidence
		1090	.	.	.	.	.	.	.		.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions