Phyre 2 alignment of A1A4S6 with c1lb1C

Job Description A1A4S6
Confidence 88.96% Date Wed May 9 18:01:49 BST 2012

Rank 374 Aligned Residues 302

% Identity 10% Template c1lb1C_

PDB info PDB header:signaling protein Chain: C: PDB Molecule:guanine nucleotide exchange factor dbs; PDBTitle: crystal structure of the dbl and pleckstrin homology2 domains of dbs in complex with rhoa

Resolution 2.81 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	R	T	N	K	F	I	K	E	L	I	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T
Query Conservation
Alig confidence																																																.	.
Template Conservation																																																.	.
Template Sequence	E	E	E	E	S	L	A	I	L	R	R	H	V	M	N	E	L	L	D	T	E	R	A	Y	V	E	E	L	L	C	V	L	E	G	Y	A	A	E	M	D	N	P	L	M	A	H	L	.	.	I	S	T	G	L	Q	N	K	K	N	I	L	F	G	N	M	E	E	I	Y	H	F	H	N	R	I	F	L	R	E	L
Template Known Secondary structure																																			T	T	G	G	G	G		G	G	G	G	G	G	.	.	S							T						T	T											T
Template Predicted Secondary structure																																																.	.
Template SS confidence
	624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670			.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	T	L	I	K	P	L	E	K	F	R	K	E	Q	L	G	A	V	K	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q
Query Conservation
Alig confidence																						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	S	C	I	D	C	P	E	L	V	G	R	C	F	L	E	R	M	E	E	F	.	Q	I	Y	E	K	Y	C	Q	N	K	P	R	S	E	S	L	W	R	Q	C	S	D	C	P	F	F	Q	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	K
Template Known Secondary structure		T	T	S	S		G	G	G							T	T	T	T	G	G	.	G																				T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.		.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.																											.	.	.

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence	E	R	K	K	F	E	F	V	E	P	M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	.	.	.	.	.	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	A	S
Query Conservation																																	.	.	.	.	.
Alig confidence																																	.	.	.	.	.																											.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence	L	D	H	K	L	S	L	D	S	Y	L	L	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E	M	L	K	Y	S	K	H	C	E	G	A	E	D	L	Q	E	A	L	S	S	I	L	G	I	L	K	A	V	N	D	S	M	H	L	I	A	.	.	.	.	.	I	T	G	Y	D	G	N	L	G	D	L	G
Template Known Secondary structure		T		S	S							T							T	T											T		T	T	S	T	T																									T	T	.	.	.	.	.					S	S		S	G	G	G
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
	755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.						.	.	820	.	.	.	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																			.	.	.	.
Query SS confidence																			.																																			.	.	.	.
Query Sequence	Q	F	T	A	E	G	Y	L	Y	V	Q	E	K	R	P	A	P	F	.	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	.	.	.	.	E	V	F	F	L	K	E	C	T	K	R	H	T	D	S	I	D	R	R	F	C	F	D
Query Conservation																			.																																			.	.	.	.
Alig confidence																			.																																			.	.	.	.															.
Template Conservation																																																																								.
Template Sequence	K	L	L	M	Q	G	S	F	S	V	W	T	D	H	K	K	G	L	A	R	F	K	P	M	Q	R	H	L	F	L	H	E	K	A	V	L	F	C	K	K	R	E	E	N	G	E	G	Y	E	K	A	P	S	Y	S	Y	K	Q	S	L	N	M	T	A	V	G	I	T	E	N	V	.	K	G	D	T	K	K	F	E
Template Known Secondary structure																				S	S	S										S	S												S	S	S	G	G	G	S											G	G	G							B	.	T	T	B	T	T
Template Predicted Secondary structure																																																																								.
Template SS confidence
	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900		.	.	.	.	.	.	.	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S	E	E	E	R	K	Q	W	L	E	A	L
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence	I	W	Y	N	A	.	R	E	E	V	Y	I	I	Q	A	P	T	P	E	I	K	A	A	W	V	N	E	I
Template Known Secondary structure				G	G	.	G	T								S	S
Template Predicted Secondary structure						.
Template SS confidence
	915	.	.	.	.		920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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