Phyre 2 alignment of A1A4S6 with d1iega_

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Job Description | A1A4S6
Confidence | 34.11% | Date | Wed May 9 18:01:49 BST 2012
Rank | 405 | Aligned Residues | 42
% Identity | 17% | Template | d1iega_
SCOP info | Herpes virus serine proteinase, assemblin | Herpes virus serine proteinase, assemblin | Herpes virus serine proteinase, assemblin
Resolution | 2.00

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 735 | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | 760 | . | . | . | . |  |  | . | . | . | . | . | 770 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | V | Y | P | C | E | A | E | H | S | S | E | L | S | F | E | I | G | A | I | . | . | . | . | . | . | . | F | E | D | V | Q | T | S | R | E | P | . | . | G | W | L | E | G | T | L | N | G | K | R | G | L | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  | . |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | R | Y | D | Q | S | P | D | E | A | . | E | L | L | L | P | R | D | V | V | E | H | W | L | A | L | P | L | . | N | I | N | H | D | D | T | A | V | V | G | H | V | A | A | M | Q | S | V | R | D | G | L | F
Template Known Secondary structure |  |  |  | T | T |  |  |  | S | S | G | . | G | G |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  | . |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 21 | . | . | . | . | . | . | . | . | 30 |  | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . |  | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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