Phyre 2 alignment of A1A4S6 with c2d9lA_

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Job Description | A1A4S6
Confidence | 70.28% | Date | Wed May 9 18:01:49 BST 2012
Rank | 391 | Aligned Residues | 28
% Identity | 14% | Template | c2d9lA_
PDB info | PDB header:gene regulation | Chain: A: PDB Molecule:nucleoporin-like protein rip; | PDBTitle: solution structure of the arfgap domain of human rip
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 402 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | C | I | S | A | V | E | T | R | . | . | . | . | . | . | . | . | . | . | . | . | G | I | N | D | Q | G | L | Y | R | V | V | G | V | S | S | K | V | Q | R | L
Query Conservation |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | F | D | C | D | Q | R | G | P | T | Y | V | N | M | T | V | G | S | F | V | C | T | S | C | S | G | S | L | R | G | L | N | P | P | H | R | V | K | S | I
Template Known Secondary structure |  |  | S | S | S |  |  | B | S |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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