Phyre 2 alignment of A1A4S6 with d2pbka1

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Job Description | A1A4S6
Confidence | 39.34% | Date | Wed May 9 18:01:49 BST 2012
Rank | 403 | Aligned Residues | 43
% Identity | 21% | Template | d2pbka1
SCOP info | Herpes virus serine proteinase, assemblin | Herpes virus serine proteinase, assemblin | Herpes virus serine proteinase, assemblin
Resolution | 1.73

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 735 | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 760 | . | . | . | . |  |  | . | . | . | . | . | 770 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | V | Y | P | C | E | A | E | H | S | S | E | L | S | F | E | I | G | A | I | F | . | . | . | . | . | . | . | . | . | . | E | D | V | Q | T | S | R | E | P | . | . | G | W | L | E | G | T | L | N | G | K | R | G | L | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | V | V | S | C | P | K | L | . | E | Q | E | L | Y | L | D | P | D | Q | V | T | D | Y | L | P | V | T | E | P | L | P | I | T | I | E | H | L | P | E | T | E | V | G | W | T | L | G | L | F | Q | V | S | H | G | I | F
Template Known Secondary structure |  |  |  | T | T | S |  |  |  | . | S | G | G | G |  |  |  |  |  |  |  | G | G | G |  |  | B |  | S |  |  |  |  |  |  | T | T |  | T | T | B |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 12 | . | . | . | . | . | . | . |  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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