11/05/2012 01:30:31 : INFO  : Run start: Fri May 11 01:30:31 BST 2012
11/05/2012 01:30:31 : INFO  : Initialised job
11/05/2012 01:30:31 : INFO  : Initialised job:
Sequence
>batch____
MGLQPLEFSDCYLDSPWFRERIRAHEAELERTNKFIKELIKDGKNLIAATKSLSVAQRKF
AHSLRDFKFEFIGDAVTDDERCIDASLREFSNFLKNLEEQREIMALSVTETLIKPLEKFR
KEQLGAVKEEKKKFDKETEKNYSLIDKHLNLSAKKKDSHLQEADIQVEQNRQHFYELSLE
YVCKLQEIQERKKFEFVEPMLSFFQGMFTFYHQGHELAKDFNHYKMELQINIQNTRNRFE
GTRSEVEELMNKIRQNPKDHKRASQFTAEGYLYVQEKRPAPFGSSWVKHYCMYRKAAKKF
NMIPFEHRSGGKLGDGEVFFLKECTKRHTDSIDRRFCFDIEAADRPGVSLTMQAFSEEER
KQWLEALGGKEALSHSFNTAIIPRPEGNAQLDKMGFTIIRKCISAVETRGINDQGLYRVV
GVSSKVQRLLSMLMDVKTCNEVDLENSADWEVKTITSALKQYLRSLPEPLMTYELHGDFI
VPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHLTNVSNHSKQNLMTVANLGVVFGP
TLMRPQEETVAALMDLKFQNIVVEILIENHEKIFRTPPDTTFPEPTCLSASPPNAPPRQS
KRQGQRTKRPVAVYNLCLELEDGDNPYPSKEDTPTSSLDSLSSPSPVTTAVPGPPGPDKN
HLLADGGSFGDWASTIPGQTRSSMVQWLNPQSPTTTSSNSAVTPLSPGSSPFPFSPPATV
ADKPPESIRSRKARAVYPCEAEHSSELSFEIGAIFEDVQTSREPGWLEGTLNGKRGLIPQ
NYVKLL

11/05/2012 01:30:31 : INFO  : Checked sequence
11/05/2012 01:30:31 : INFO  : Finding homologues with PSI-BLAST
11/05/2012 01:30:31 : INFO  : PSI-BLAST 3 iterations
11/05/2012 01:34:38 : INFO  : PSI-BLAST 5 iterations
11/05/2012 01:38:23 : INFO  : Finished PSI-BLAST
11/05/2012 01:38:23 : INFO  : Running Buildali to generate a3m file
11/05/2012 02:00:53 : INFO  : Converting to HMM
11/05/2012 02:01:01 : INFO  : Calibrating HMM
11/05/2012 02:01:23 : INFO  : Searching HMM database
11/05/2012 02:17:05 : INFO  : Finished buildali
11/05/2012 02:17:05 : INFO  : Predicting secondary structure
11/05/2012 02:17:06 : INFO  : Predicted secondary structure (PSI-Pred)
11/05/2012 02:17:06 : INFO  : Predicting Disordered regions
11/05/2012 02:17:07 : INFO  : Predicted Disorder (Disopred)
11/05/2012 02:17:07 : INFO  : Running memsat_svm check
11/05/2012 02:20:55 : INFO  : Running memsat_svm full
11/05/2012 02:23:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '5443ad005cccc0f3'
11/05/2012 02:23:09 : INFO  : Initialising fold library search
11/05/2012 02:23:09 : INFO  : Initialised search input
11/05/2012 02:23:09 : INFO  : Building Ensemble models
11/05/2012 02:23:09 : INFO  : Building hh.c2q13A_.model.1.pdb
11/05/2012 02:23:10 : INFO  : Building hh.c1xa6A_.model.2.pdb
11/05/2012 02:23:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c1xa6A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c1xa6A_.3.pdb
11/05/2012 02:23:10 : INFO  : Building hh.c3byiA_.model.3.pdb
11/05/2012 02:23:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c3byiA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c3byiA_.4.pdb
11/05/2012 02:23:10 : INFO  : Building hh.c1f7cA_.model.4.pdb
11/05/2012 02:23:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c1f7cA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c1f7cA_.5.pdb
11/05/2012 02:23:11 : INFO  : Building hh.d1f7ca_.model.5.pdb
11/05/2012 02:23:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.d1f7ca_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/d1f7ca_.6.pdb
11/05/2012 02:23:11 : INFO  : Building hh.c1mv3A_.model.6.pdb
11/05/2012 02:23:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c1mv3A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c1mv3A_.23.pdb
11/05/2012 02:23:12 : INFO  : Building hh.c1griA_.model.7.pdb
11/05/2012 02:23:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c1griA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c1griA_.30.pdb
11/05/2012 02:23:12 : INFO  : Building hh.c2dx1A_.model.8.pdb
11/05/2012 02:23:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c2dx1A_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c2dx1A_.32.pdb
11/05/2012 02:23:12 : INFO  : Building hh.c2l3sA_.model.9.pdb
11/05/2012 02:23:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/hh.c2l3sA_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5443ad005cccc0f3/c2l3sA_.33.pdb
11/05/2012 02:23:13 : INFO  : Building c2q13A_.1.pdb
11/05/2012 02:23:13 : INFO  : Building d2elba1.2.pdb
11/05/2012 02:23:13 : INFO  : Building c1xa6A_.3.pdb
11/05/2012 02:23:14 : INFO  : Building c3byiA_.4.pdb
11/05/2012 02:23:14 : INFO  : Building c1f7cA_.5.pdb
11/05/2012 02:23:15 : INFO  : Building d1f7ca_.6.pdb
11/05/2012 02:23:15 : INFO  : Building c2ovjA_.7.pdb
11/05/2012 02:23:15 : INFO  : Building d1xa6a1.8.pdb
11/05/2012 02:23:16 : INFO  : Building c2ee5A_.9.pdb
11/05/2012 02:23:16 : INFO  : Building c3iugA_.10.pdb
11/05/2012 02:23:17 : INFO  : Building c3fk2B_.11.pdb
11/05/2012 02:23:17 : INFO  : Building c3msxB_.12.pdb
11/05/2012 02:23:17 : INFO  : Building c2ngrB_.13.pdb
11/05/2012 02:23:18 : INFO  : Building d1tx4a_.14.pdb
11/05/2012 02:23:18 : INFO  : Building c3kuqA_.15.pdb
11/05/2012 02:23:19 : INFO  : Building c3qisA_.16.pdb
11/05/2012 02:23:19 : INFO  : Building d1pbwa_.17.pdb
11/05/2012 02:23:19 : INFO  : Building c1pbwB_.18.pdb
11/05/2012 02:23:20 : INFO  : Building c3eapD_.19.pdb
11/05/2012 02:23:20 : INFO  : Building c2qv2A_.20.pdb
11/05/2012 02:23:28 : INFO  : Finished HH model building
11/05/2012 02:23:28 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
11/05/2012 02:23:35 : INFO  : html domain output complete ID '5443ad005cccc0f3'
11/05/2012 03:10:46 : INFO  : Run end  : Fri May 11 03:10:46 BST 2012
