Phyre 2 alignment of A1A4S6 with c1u3oA_

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Job Description | A1A4S6
Confidence | 99.20% | Date | Wed May 9 18:01:49 BST 2012
Rank | 226 | Aligned Residues | 59
% Identity | 32% | Template | c1u3oA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:huntingtin-associated protein-interacting | PDBTitle: solution structure of rat kalirin n-terminal sh3 domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 727 | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . |  | . | . | . | . | . | 770 |  |  |  |  | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | I | R | S | R | K | A | R | A | V | Y | P | C | E | A | E | H | S | S | E | L | S | F | E | I | G | A | I | F | E | D | V | Q | T | S | R | E | P | . | G | W | L | E | G | T | . | . | . | . | L | N | G | K | R | G | L | I | P | Q | N | Y | V | K | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | G | G | C | E | L | T | V | V | L | Q | D | F | S | A | A | H | S | S | E | L | S | I | Q | V | G | Q | T | V | E | L | L | E | R | P | S | E | R | P | G | W | C | L | V | R | T | T | E | R | S | P | P | Q | E | G | L | V | P | S | S | T | L | C | I
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | S | S |  | B |  |  |  | S | T | T |  |  |  | B |  | T | T |  |  |  |  |  | S | S |  | T | T | S | S | T | T |  |  |  |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  | G | G | G | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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