 |
| Job Description | Q8IXH6 | | Confidence | 4.07% | Date | Thu Apr 26 09:34:36 BST 2012 |
| Rank | 79 | Aligned Residues | 37 |
| % Identity | 16% | Template | c1qyuA_ |
| PDB info |
PDB header:lyase | Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; |
PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
|
| Resolution | 2.00 Å |
|
|   |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
D | C | P | R | A | F | V | S | E | E | D | E | V | D | G | W | L | I | I | D | L | P | D | S | Y | A | A | P | P | S | P | G | A | A | P | A | P |
| Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
| Template Sequence |   |
E | P | Q | D | I | P | L | D | I | V | Y | E | D | E | D | I | I | I | I | N | K | P | R | D | L | V | V | H | P | G | A | G | N | P | D | G | T |
| Template Known Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
| S | S |  |  |  |  |  |  |
| S | S |
|
| S | S |
| B | T | T | B | S | S | S | S |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|