Return to main results Retrieve Phyre Job Id

Job DescriptionQ8IXH6
Confidence14.49%DateThu Apr 26 09:34:36 BST 2012
Rank12Aligned Residues20
% Identity30%Templatec1xk5A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:snurportin-1; PDBTitle: crystal structure of the m3g-cap-binding domain of2 snurportin1 in complex with a m3gpppg-cap dinucleotide
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.......
Predicted Secondary structure 






































Query SS confidence 











































Query Sequence  GWLIIDLPDSYAAPPSPGAAPAPAGRPPPAPSLMDESWFVTPPA
Query Conservation   





     
                 
  










Alig confidence 

.






.......................










Template Conservation 

.
  

 
.......................
   
  



Template Sequence  EW. LIDVPSD. . . . . . . . . . . . . . . . . . . . . . . LGQEWIVVVCP
Template Known Secondary structure  .

S

TT.......................
Template Predicted Secondary structure  .



.......................






Template SS confidence 











































   106. ..110.... .....120.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions