Email l.a.kelley@imperial.ac.uk Description A0AV96 Date Fri May 25 09:48:37 BST 2012 Unique Job ID 508d712d64f673b7

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ghpC_ 100.0 18 PDB header:rna binding protein Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24; PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24 2 c3h2uD_ 100.0 18 PDB header:cell adhesion Chain: D: PDB Molecule:raver-1; PDBTitle: human raver1 rrm1, rrm2, and rrm3 domains in complex with2 human vinculin tail domain vt 3 c3s01A_ 100.0 18 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 4 c2adcA_ 100.0 20 PDB header:rna binding protein/rna Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna 5 c1qm9A_ 100.0 20 PDB header:ribonucleoprotein Chain: A: PDB Molecule:polypyrimidine tract-binding protein; PDBTitle: nmr, representative structure 6 c3sdeB_ 100.0 25 PDB header:rna binding protein Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein; PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono 7 c2go9A_ 99.9 27 PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 snrna-associated splicing factor prp24; PDBTitle: rrm domains 1 and 2 of prp24 from s. cerevisiae 8 c2yh0A_ 99.9 23 PDB header:transcription Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains 9 c2qfjA_ 99.9 25 PDB header:transcription repressor/dna Chain: A: PDB Molecule:fbp-interacting repressor; PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse 10 d1u1qa_ 99.9 26 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 11 c1rkjA_ 99.9 23 PDB header:transcription/rna Chain: A: PDB Molecule:nucleolin; PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target 12 c2dhsA_ 99.9 29 PDB header:rna binding protein Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1; PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna 13 c1cvjF_ 99.9 30 PDB header:gene regulation/rna Chain: F: PDB Molecule:polyadenylate binding protein 1; PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna 14 c2cjkA_ 99.9 21 PDB header:rna-binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4; PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna 15 c1fnxH_ 99.9 22 PDB header:immune system/rna Chain: H: PDB Molecule:hu antigen c; PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element 16 c1b7fA_ 99.9 26 PDB header:rna-binding protein/rna Chain: A: PDB Molecule:protein (sxl-lethal protein); PDBTitle: sxl-lethal protein/rna complex 17 c3md3A_ 99.9 31 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1) 18 c2f3jA_ 99.8 14 PDB header:transport protein Chain: A: PDB Molecule:rna and export factor binding protein 2; PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155). 19 d1hl6a_ 99.8 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 20 c2i38A_ 99.8 22 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 21 c2g4bA_ not modelled 99.8 23 PDB header:rna binding protein/rna Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: structure of u2af65 variant with polyuridine tract 22 d1u6fa1 not modelled 99.8 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 23 c3s8sA_ not modelled 99.8 20 PDB header:transcription Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a; PDBTitle: crystal structure of the rrm domain of human setd1a 24 c2kn4A_ not modelled 99.8 23 PDB header:rna binding protein Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor; PDBTitle: the structure of the rrm domain of sc35 25 c2ku7A_ not modelled 99.8 24 PDB header:transcription Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein; PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein 26 d1h2tz_ not modelled 99.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 27 d1n54b_ not modelled 99.8 21 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 28 c2do0A_ not modelled 99.8 24 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m; PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m 29 c2dnoA_ not modelled 99.8 22 PDB header:rna binding protein Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant; PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant 30 c2dgpA_ not modelled 99.8 34 PDB header:rna binding protein Chain: A: PDB Molecule:bruno-like 4, rna binding protein; PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein 31 d2cpza1 not modelled 99.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 32 c3pgwS_ not modelled 99.8 26 PDB header:splicing/dna/rna Chain: S: PDB Molecule:u1-70k; PDBTitle: crystal structure of human u1 snrnp 33 c2rneA_ not modelled 99.8 23 PDB header:rna binding protein Chain: A: PDB Molecule:tia1 protein; PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1 34 c2dhgA_ not modelled 99.8 20 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43); PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein 35 d1whxa_ not modelled 99.8 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 36 c2jwnB_ not modelled 99.8 22 PDB header:rna binding protein Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b; PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2 37 d2cq0a1 not modelled 99.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 38 d2f9da1 not modelled 99.8 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 39 c2do4A_ not modelled 99.8 23 PDB header:immune system Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t- PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3 40 d1x5ua1 not modelled 99.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 41 d1rk8a_ not modelled 99.8 32 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 42 c2e44A_ not modelled 99.8 20 PDB header:rna binding protein Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3 43 d1fxla1 not modelled 99.8 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 44 d2j0sd1 not modelled 99.8 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 45 d1fnxh2 not modelled 99.8 25 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 46 c2fy1A_ not modelled 99.8 26 PDB header:structural protein/rna Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family PDBTitle: a dual mode of rna recognition by the rbmy protein 47 c3egnA_ not modelled 99.8 18 PDB header:splicing Chain: A: PDB Molecule:rna-binding protein 40; PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein 48 d1fj7a_ not modelled 99.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 49 c2dnmA_ not modelled 99.8 26 PDB header:rna binding protein Chain: A: PDB Molecule:srp46 splicing factor; PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor 50 d1b7fa1 not modelled 99.8 31 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 51 d1fjeb1 not modelled 99.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 52 d1x4ha1 not modelled 99.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 53 c2dnzA_ not modelled 99.8 29 PDB header:rna binding protein Chain: A: PDB Molecule:probable rna-binding protein 23; PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23 54 c3bs9A_ not modelled 99.8 28 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40; PDBTitle: x-ray structure of human tia-1 rrm2 55 c2kxnB_ not modelled 99.8 27 PDB header:rna binding protein/rna Chain: B: PDB Molecule:transformer-2 protein homolog beta; PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna 56 d1whwa_ not modelled 99.8 26 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 57 c2dgsA_ not modelled 99.8 24 PDB header:rna binding protein Chain: A: PDB Molecule:daz-associated protein 1; PDBTitle: solution structure of the second rna binding domain in daz-2 associated protein 1 58 c2rs2A_ not modelled 99.8 18 PDB header:rna binding protein/rna Chain: A: PDB Molecule:rna-binding protein musashi homolog 1; PDBTitle: 1h, 13c, and 15n chemical shift assignments for musashi1 rbd1:r(guagu)2 complex 59 d1h2vz_ not modelled 99.8 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 60 d1x5oa1 not modelled 99.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 61 c3ex7B_ not modelled 99.8 24 PDB header:hydrolase/rna binding protein/rna Chain: B: PDB Molecule:rna-binding protein 8a; PDBTitle: the crystal structure of ejc in its transition state 62 d1cvja1 not modelled 99.7 28 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 63 d2up1a2 not modelled 99.7 28 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 64 c3nnhA_ not modelled 99.7 25 PDB header:rna binding protein/rna Chain: A: PDB Molecule:cugbp elav-like family member 1; PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna 65 d2disa1 not modelled 99.7 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 66 c3cw18_ not modelled 99.7 29 PDB header:splicing Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda; PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp 67 d2cpha1 not modelled 99.7 26 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 68 d2adca1 not modelled 99.7 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 69 d1l3ka1 not modelled 99.7 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 70 d2cqga1 not modelled 99.7 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 71 d2ghpa3 not modelled 99.7 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 72 d1uawa_ not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 73 c2e5hA_ not modelled 99.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif- PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1 74 d1fnxh1 not modelled 99.7 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 75 c2e5jA_ not modelled 99.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing 76 d2cpxa1 not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 77 d1x5sa1 not modelled 99.7 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 78 c2divA_ not modelled 99.7 15 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein; PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein 79 d1x4ba1 not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 80 c2x1aA_ not modelled 99.7 30 PDB header:transcription/rna Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15; PDBTitle: structure of rna15 rrm with rna bound (g) 81 d2cpea1 not modelled 99.7 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 82 c2dgtA_ not modelled 99.7 30 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein 30; PDBTitle: solution structure of the second rna binding domain in rna-2 binding protein 30 83 d1fxla2 not modelled 99.7 28 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 84 d2cqda1 not modelled 99.7 30 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 85 d1x4aa1 not modelled 99.7 26 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 86 d2cq3a1 not modelled 99.7 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 87 c2fc8A_ not modelled 99.7 22 PDB header:rna binding protein Chain: A: PDB Molecule:ncl protein; PDBTitle: solution structure of the rrm_1 domain of ncl protein 88 d2cpda1 not modelled 99.7 69 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 d1zh5a2 not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 90 d1b7fa2 not modelled 99.7 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1wi8a_ not modelled 99.7 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 92 d1sxla_ not modelled 99.7 30 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 c2d9pA_ not modelled 99.7 21 PDB header:rna binding protein Chain: A: PDB Molecule:polyadenylate-binding protein 3; PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3 94 c2la4A_ not modelled 99.7 26 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: nmr structure of the c-terminal rrm domain of poly(u) binding 1 95 c2dngA_ not modelled 99.7 18 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h; PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h 96 c2dh8A_ not modelled 99.7 16 PDB header:rna binding protein Chain: A: PDB Molecule:daz-associated protein 1; PDBTitle: solution structure of the n-terminal rna binding domain in2 daz-associated protein 1 97 c3md1B_ not modelled 99.7 25 PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) 98 d1l3ka2 not modelled 99.7 30 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 99 d2cq4a1 not modelled 99.7 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 100 c2ywkA_ not modelled 99.7 26 PDB header:rna binding protein Chain: A: PDB Molecule:putative rna-binding protein 11; PDBTitle: crystal structure of rrm-domain derived from human putative2 rna-binding protein 11 101 d2cqca1 not modelled 99.7 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 102 d2msta_ not modelled 99.7 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 103 d2u2fa_ not modelled 99.7 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 104 d1no8a_ not modelled 99.7 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 105 c1no8A_ not modelled 99.7 20 PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain 106 d1wg4a_ not modelled 99.7 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 107 d2cqba1 not modelled 99.7 25 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 108 c2adbA_ not modelled 99.7 18 PDB header:rna binding protein/rna Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd2 complexed with cucucu rna 109 c3b4mD_ not modelled 99.7 22 PDB header:rna binding protein Chain: D: PDB Molecule:polyadenylate-binding protein 2; PDBTitle: crystal structure of human pabpn1 rrm 110 d2u1aa_ not modelled 99.7 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 111 d1x4ga1 not modelled 99.7 22 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 112 c3q2tC_ not modelled 99.7 18 PDB header:rna binding protein/rna Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex 113 c2dh9A_ not modelled 99.7 24 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m; PDBTitle: solution structure of the c-terminal rna binding domain in2 heterogeneous nuclear ribonucleoprotein m 114 c2la6A_ not modelled 99.7 23 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein fus; PDBTitle: solution nmr structure of rrm domain of rna-binding protein fus from2 homo sapiens, northeast structural genomics consortium target hr6430a 115 c2dgxA_ not modelled 99.7 22 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein 116 d1hd0a_ not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 117 d2b0ga1 not modelled 99.7 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 118 c2dgwA_ not modelled 99.7 21 PDB header:rna binding protein Chain: A: PDB Molecule:probable rna-binding protein 19; PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19 119 d2cqpa1 not modelled 99.7 24 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 120 c2dnnA_ not modelled 99.7 20 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein 12; PDBTitle: solution structure of rna binding domain in rna-binding2 protein 12