Job Description A0AV96 Confidence 99.82% Date Fri May 25 09:48:37 BST 2012 Rank 22 Aligned Residues 123 % Identity 24% Template d1u6fa1 SCOP info Ferredoxin-like RNA-binding domain, RBD Canonical RBD Resolution UNK

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	P	N	E	A	A	L	L	A	L	M	E	R	T	G	Y	S	M	V	Q	E	N	G	Q	R	K	Y	G	G	P	P	P	G	W	E	G	P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		M	S	Q	I	P	L	V	S	Q	Y	D	P	Y	G	Q	T	A	Q	L	Q	Q	L	Q	Q	Q	Q	Q	Q	H	I	P	P	T	Q	M	N	P	E	P	D	V	L	R	N	L	M	V	N	Y	I	P	T	T	V	D	E	V	Q	L	R	Q	L	F	E	R	Y	G	P	I	E	S	V	K	I	V	C	D	R	E	T
Template Known Secondary structure							S	S		S			S				S				S	S		S	S	S		T	T				S	S		S	S			T	T	T	T	S						S		S	T	T														S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V	D	N	C	R
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		R	Q	S	R	G	Y	G	F	V	K	F	Q	S	G	S	S	A	Q	Q	A	I	A	G	L	N	G	F	N	I	L	.	N	K	R	L	K	V	A	L	A	A	S	G	H	Q
Template Known Secondary structure		T											S	S											T	T	T				S	.	S								S	S
Template Predicted Secondary structure																																.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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