Job Description A0AV96 Confidence 99.96% Date Fri May 25 09:48:37 BST 2012 Rank 6 Aligned Residues 159 % Identity 25% Template c3sdeB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein; PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono Resolution 1.90 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V	D	N
Query Conservation
Alig confidence																																		.	.	.	.	.																															.
Template Conservation																																		.	.	.	.	.																															.
Template Sequence		S	R	L	F	V	G	N	L	P	P	D	I	T	E	E	E	M	R	K	L	F	E	K	Y	G	K	A	G	E	V	F	I	.	.	.	.	.	H	K	D	K	G	F	G	F	I	R	L	E	T	R	T	L	A	E	I	A	K	V	E	L	D	N	M	P	L	R	.	G	K	Q	L	R	V	R	F	A	C	H	S
Template Known Secondary structure		G						S			T	T											G	G	G	S								.	.	.	.	.		T	T	T	T							S	S												T	T				T	.	T											T
Template Predicted Secondary structure																																		.	.	.	.	.																															.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q	L	.	.	W	G	H	Q	I	A	V
Query Conservation																																																																									.	.
Alig confidence																											.											.	.																																		.	.
Template Conservation																											.											.	.
Template Sequence		A	S	L	T	V	R	N	L	P	Q	Y	V	S	N	E	L	L	E	E	A	F	S	V	F	G	.	Q	V	E	R	A	V	V	I	V	D	.	.	D	R	G	R	P	S	G	K	G	I	V	E	F	S	G	K	P	A	A	R	K	A	L	D	R	C	S	E	G	S	F	L	L	T	T	F	P	R	P	V	T	V
Template Known Secondary structure		T						S			T	T											T	T	S	S	.											.	.	T	T	S											S	S														S				S	S	S	S
Template Predicted Secondary structure																											.											.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		229	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	A	E	P	E	I	D	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	M	D	Q	L	D	D	E	E
Template Known Secondary structure										S	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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