Job Description A0AV96 Confidence 100.00% Date Fri May 25 09:48:37 BST 2012 Rank 3 Aligned Residues 198 % Identity 18% Template c3s01A_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution Resolution 2.15 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	.	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C
Query Conservation																	.
Alig confidence																	.																									.	.	.	.																												.
Template Conservation																																										.	.	.	.																												.
Template Sequence		A	D	S	P	V	L	X	V	Y	G	L	D	Q	S	K	X	N	C	D	R	V	F	N	V	F	C	L	Y	G	N	V	E	K	V	K	F	X	K	S	K	.	.	.	.	P	G	A	A	X	V	E	X	A	D	G	Y	A	V	D	R	A	I	T	H	L	N	N	N	F	X	F	.	G	Q	K	X	N	V	C	V
Template Known Secondary structure			S	S	S						S			T	T	T											T	T	T	S									T	T	S	.	.	.	.	T	T							S	S												T	T				T	.	T
Template Predicted Secondary structure																																										.	.	.	.																												.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.					.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	N	C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q	L	W	G	H	Q	I
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	Q	P	A	I	X	P	G	Q	S	Y	G	L	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	S	Y	K	D	F	S	E	S	R
Template Known Secondary structure			S	S	S	S					S			B		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	S					T	T		T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.																																																					.	.	470	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		A	V	D	W	A	E	P	E	I	D	V	D	E	D	V	M	E	T	V	K	I	L	Y	V	R	N	L	M	I	E	T	T	E	D	T	I	K	K	S	F	G	Q	F	N	P	G	C	V	E	R	V	.	.	.	K	K	I	R	D	Y	A	F	V	H	F	T	S	R	E	D	A	V	H	A	M	N	N	L	N	G
Query Conservation																																																					.	.	.
Alig confidence																																																					.	.	.
Template Conservation
Template Sequence		N	N	R	F	S	T	P	E	Q	A	A	K	N	R	I	Q	H	P	S	N	V	L	H	F	F	N	A	P	L	E	V	T	E	E	N	F	F	E	I	C	D	E	L	G	V	K	R	P	T	S	V	K	V	F	S	G	R	S	S	S	G	L	L	E	W	D	S	K	S	D	A	L	E	T	L	G	F	L	N	H
Template Known Secondary structure		T		S		S	S						T	S							S									T	T														T					S																	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		T	E	L	E	G	S	C	.	.	.	.	.	.	L	E	V	T	L	A	K	P	V	D	K	E
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	X	K	N	P	N	G	P	Y	P	Y	T	L	K	L	C	F	S	T	A	Q	H	A	S
Template Known Secondary structure							S	S	S	S	S												S
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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