Job Description A0AV96 Confidence 99.71% Date Fri May 25 09:48:37 BST 2012 Rank 112 Aligned Residues 78 % Identity 18% Template c3q2tC_ PDB info PDB header:rna binding protein/rna Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex Resolution 3.06 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.												.
Query SS confidence																										.	.												.
Query Sequence		E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	.	.	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V
Query Conservation																										.	.												.
Alig confidence																										.	.												.																																.
Template Conservation																																																																							.
Template Sequence		A	L	Y	I	G	N	L	T	W	W	T	T	D	E	D	L	T	E	A	V	H	S	L	G	V	N	D	I	L	E	I	K	F	F	E	N	R	A	N	G	Q	S	K	G	F	A	L	V	G	V	G	S	E	A	S	S	K	K	L	M	D	L	L	P	K	R	E	L	H	.	G	Q	N	P	V	V	T	P	V	N
Template Known Secondary structure							S			T	T											G	G	G	T													T	T	T												S	S	S	S									S	T	T	S		B	T	.	T	B
Template Predicted Secondary structure																																																																							.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160
		149	150
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		161	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions