Job Description A0AV96 Confidence 99.69% Date Fri May 25 09:48:37 BST 2012 Rank 137 Aligned Residues 106 % Identity 17% Template c3pgwP_ PDB info PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp Resolution 4.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	.	.	.	.	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																.	.																																	.
Template Conservation																																													.	.																																	.
Template Sequence		P	E	T	R	P	N	H	T	I	Y	I	N	N	L	N	E	K	I	K	K	D	E	L	K	K	S	L	Y	A	I	F	S	Q	F	G	Q	I	L	D	I	L	V	S	.	.	R	S	L	K	M	R	G	Q	A	F	V	I	F	K	E	V	S	S	A	T	N	A	L	R	S	M	Q	G	F	P	F	Y	.	D	K
Template Known Secondary structure		S	T	T	S			S						S			T	T	S														T	T	T	S		B	S			B			.	.		S	T	T	T	S	S						B	S	S										T	T	T	T				T	.	T
Template Predicted Secondary structure																																													.	.																																	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	V	C	C	S	V	D	N	C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	R	I	Q	Y	A	K	T	D	S	D	I	I	A	K	M	K	G	T	F	V	E	R	D	R	K	R	E	K	R	K	P
Template Known Secondary structure									S	S									S	S	S	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions