Job Description A0AV96 Confidence 99.75% Date Fri May 25 09:48:37 BST 2012 Rank 64 Aligned Residues 81 % Identity 25% Template c3nnhA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:cugbp elav-like family member 1; PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna Resolution 2.75 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.
Predicted Secondary structure																																								.	.	.																																.	.
Query SS confidence																																								.	.	.																																.	.
Query Sequence		R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	.	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	.	.	P	G	R	L	L	G
Query Conservation																																								.	.	.																																.	.
Alig confidence																																								.	.	.																																.	.
Template Conservation
Template Sequence		D	A	I	K	M	F	V	G	Q	V	P	R	T	W	S	E	K	D	L	R	E	L	F	E	Q	Y	G	A	V	Y	E	I	N	V	L	R	D	R	S	Q	N	P	P	Q	S	K	G	C	C	F	V	T	F	Y	T	R	K	A	A	L	E	A	Q	N	A	L	H	N	M	K	V	L	P	G	M	H	H	P	I	Q
Template Known Secondary structure													T	T											T	T	T	S											T	T	S	S	S												S													T	T	T				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		144	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	C	S	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	P	A	D	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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