Job Description A0AV96 Confidence 99.75% Date Fri May 25 09:48:37 BST 2012 Rank 66 Aligned Residues 80 % Identity 29% Template c3cw18_ PDB info PDB header:splicing Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda; PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp Resolution 5.49 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C
Query Conservation																																										.
Alig confidence																																										.																																.
Template Conservation																																																																										.
Template Sequence		L	K	M	W	K	T	L	F	V	A	R	V	N	Y	D	T	T	E	S	K	L	R	R	E	F	E	V	Y	G	P	I	K	R	I	H	M	V	Y	S	K	R	S	G	K	P	R	G	Y	A	F	I	E	Y	E	H	E	R	D	M	H	S	A	Y	K	H	A	D	G	K	K	I	D	.	G	R	R	V	L	V	D
Template Known Secondary structure		G	G								B				T	T												T	T	S											S	S	S		S										S	S												T	T			S	S	.	S				B
Template Predicted Secondary structure																																																																										.
Template SS confidence
		686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.		.	.	760	.	.	.	.
		146	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		778	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions