Job Description A0AV96 Confidence 99.72% Date Fri May 25 09:48:37 BST 2012 Rank 109 Aligned Residues 77 % Identity 22% Template c3b4mD_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:polyadenylate-binding protein 2; PDBTitle: crystal structure of human pabpn1 rrm Resolution 2.82 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C
Query Conservation																																									.
Alig confidence																																									.																								.								.
Template Conservation																																																																	.								.
Template Sequence		A	D	A	R	S	I	Y	V	G	N	V	D	Y	G	A	T	A	E	E	L	E	A	H	F	H	G	C	G	S	V	N	R	V	T	I	L	C	D	K	F	S	G	H	P	K	G	F	A	Y	I	E	F	S	D	K	E	S	V	R	T	S	L	A	.	L	D	E	S	L	F	R	.	G	R	Q	I	K	V	I	P
Template Known Secondary structure				S	S						S			T	T											G	G	G											S		S	S	S	S										S	S	S							G	G	.	G	T	T				T	.	T
Template Predicted Secondary structure																																																																	.								.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.		.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions