Job Description A0AV96 Confidence 99.69% Date Fri May 25 09:48:37 BST 2012 Rank 143 Aligned Residues 73 % Identity 22% Template c2xnqA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		G	C	E	V	F	V	G	K	I	P	R	.	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V
Query Conservation													.
Alig confidence													.																								.	.	.	.	.	.	.																											.	.
Template Conservation																																					.	.	.	.	.	.	.																											.	.
Template Sequence		K	S	R	L	F	I	G	N	L	P	L	K	N	V	S	K	E	D	L	F	R	I	F	S	P	Y	G	H	I	M	Q	I	N	I	K	.	.	.	.	.	.	.	N	A	F	G	F	I	Q	F	D	N	P	Q	S	V	R	D	A	I	E	E	S	Q	E	M	N	F	.	.	G	K	K	L	I	L	E	V	S	S
Template Known Secondary structure		T							S			S	S												G	G	G	S									.	.	.	.	.	.	.	S	S							S	S											T	T	S			T	.	.	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.																											.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.								.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.
		149	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		401	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions