Job Description A0AV96 Confidence 99.55% Date Fri May 25 09:48:37 BST 2012 Rank 202 Aligned Residues 75 % Identity 19% Template c2vopA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:lupus la protein; PDBTitle: crystal structure of n-terminal domains of human la protein2 complexed with rna oligomer auuuu Resolution 2.8 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C
Query Conservation
Alig confidence																																																														.								.
Template Conservation																																																														.								.
Template Sequence		N	R	S	V	Y	I	K	G	F	P	T	D	A	T	L	D	D	I	K	E	W	L	E	D	K	G	Q	V	L	N	I	Q	M	R	R	T	L	H	K	A	F	K	G	S	I	F	V	V	F	D	S	I	E	S	A	K	K	F	V	E	.	T	P	G	Q	K	Y	K	.	E	T	D	L	L	I	L	F
Template Known Secondary structure		T	T									T	T											T	T	S												S	S	S											S	S									T	.		S				S	T	.	T	S
Template Predicted Secondary structure																																																														.								.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.		.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions