Job Description A0AV96 Confidence 99.78% Date Fri May 25 09:48:37 BST 2012 Rank 33 Aligned Residues 90 % Identity 23% Template c2rneA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:tia1 protein; PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1 Resolution UNK

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		P	G	W	E	G	P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P
Query Conservation																																																	.
Alig confidence																																																	.																																.
Template Conservation																																																																																	.
Template Sequence		S	S	G	Q	K	K	D	T	S	N	H	F	H	V	F	V	G	D	L	S	P	E	I	T	T	E	D	I	K	A	A	F	A	P	F	G	R	I	S	D	A	R	V	V	K	D	M	A	T	G	K	S	K	G	Y	G	F	V	S	F	F	N	K	W	D	A	E	N	A	I	Q	Q	M	G	G	Q	W	L	G	.
Template Known Secondary structure			S				S	S		S	S	S							S			T	T											G	G	G												T	T	T		S										S	S												T	T				T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	L	L	G	V	C	C	S	V	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	Q	I	R	T	N	W	A	T	R	K
Template Known Secondary structure		T								S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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