Job Description A0AV96 Confidence 99.76% Date Fri May 25 09:48:37 BST 2012 Rank 55 Aligned Residues 88 % Identity 27% Template c2kxnB_ PDB info PDB header:rna binding protein/rna Chain: B: PDB Molecule:transformer-2 protein homolog beta; PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		E	G	P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L
Query Conservation																																														.
Alig confidence																																														.																																.
Template Conservation																																																																														.
Template Sequence		N	R	A	N	P	D	P	N	C	C	L	G	V	F	G	L	S	L	Y	T	T	E	R	D	L	R	E	V	F	S	K	Y	G	P	I	A	D	V	S	I	V	Y	D	Q	Q	S	R	R	S	R	G	F	A	F	V	Y	F	E	N	V	D	D	A	K	E	A	K	E	R	A	N	G	M	E	L	D	.	G	R	R
Template Known Secondary structure			S	S					S	S		B				T		T	T	S											T	T	T	S											S	S	S	S											S													T	T			S	S	.	S	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.
		142	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	C	C	S	V	D	N	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	V	D	F	S	I	T	K	R
Template Known Secondary structure					S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions