Job Description A0AV96 Confidence 100.00% Date Fri May 25 09:48:37 BST 2012 Rank 1 Aligned Residues 228 % Identity 18% Template c2ghpC_ PDB info PDB header:rna binding protein Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24; PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24 Resolution 2.70 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V	D	N
Query Conservation
Alig confidence																																					.																															.	.
Template Conservation																																					.																															.	.
Template Sequence		T	T	V	L	V	K	N	L	P	K	S	Y	N	Q	N	K	V	Y	K	Y	F	K	H	C	G	P	I	I	H	V	D	V	A	D	S	.	L	K	K	N	F	R	F	A	R	I	E	F	A	R	Y	D	G	A	L	A	A	I	T	K	T	H	K	V	V	G	.	.	Q	N	E	I	I	V	S	H	L	T	E	C
Template Known Secondary structure											T	T											G	G	G	S											.	T	T	S	S	S								S	S									T	T	T	T				T	.	.	T										S
Template Predicted Secondary structure																																					.																															.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q	L	W	G	H	Q	I	A	V	D	W
Query Conservation
Alig confidence				.																											.	.	.	.	.	.	.	.	.
Template Conservation				.																											.	.	.	.	.	.	.	.	.
Template Sequence		T	L	.	W	X	T	N	F	P	P	S	Y	T	Q	R	N	I	R	D	L	L	Q	D	I	N	V	V	A	L	.	.	.	.	.	.	.	.	.	S	I	R	L	P	R	R	F	A	Y	I	D	V	T	S	K	E	D	A	R	Y	C	V	E	K	L	N	G	L	K	I	E	G	Y	T	L	V	T	K	V	S	N
Template Known Secondary structure				.							T	T													T	T					.	.	.	.	.	.	.	.	.														S	S												T	T				T	T
Template Predicted Secondary structure				.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		A	E	P	E	I	D	V	D	E	D	V	M	E	T	V	K	I	L	Y	V	R	N	L	M	I	E	T	T	E	D	T	I	K	K	S	F	G	Q	F	N	P	G	C	V	E	R	V	K	K	I	.	.	.	.	R	D	Y	A	F	V	H	F	T	S	R	E	D	A	V	H	A	M	N	N	L	N	G	T	E	L
Query Conservation																																																				.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.																																		.	.	.	.																			.
Template Conservation											.	.	.	.	.	.	.	.																																																								.
Template Sequence		P	L	T	L	E	G	R	E	I	.	.	.	.	.	.	.	.	X	I	R	N	L	S	T	E	L	L	D	E	N	L	L	R	E	S	F	E	G	F	G	S	I	E	K	I	N	I	P	A	G	Q	K	F	N	N	C	C	A	F	X	V	F	E	N	K	D	S	A	E	R	A	L	.	Q	X	N	R	S	L	L
Template Known Secondary structure						T	T	T			.	.	.	.	.	.	.	.							T	T	T											G	G	G	S									S														S	S								G	.	G	G	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																																								.
Template SS confidence
		195	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	S	C	L	E	V	T	L	A	K	P	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	R	E	I	S	V	S	L	A	D	K	K	P
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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