Job Description A0AV96 Confidence 99.78% Date Fri May 25 09:48:37 BST 2012 Rank 34 Aligned Residues 90 % Identity 20% Template c2dhgA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43); PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein Resolution UNK

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	G	P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	.	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		S	S	G	S	S	G	P	E	Y	S	L	F	V	G	D	L	T	P	D	V	D	D	G	M	L	Y	E	F	F	V	K	V	Y	P	S	C	R	G	G	K	V	V	L	D	Q	T	G	V	S	K	G	Y	G	F	V	K	F	T	D	E	L	E	Q	K	R	A	L	T	E	C	Q	G	A	V	G	L	G	S	K	P
Template Known Secondary structure						S	S												T	T															T	T										T	T												S												T	T	T			S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	C	C	S	V	D	N	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	L	S	V	A	I	P	K	A	S
Template Known Secondary structure						B						S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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