Job Description A0AV96 Confidence 99.73% Date Fri May 25 09:48:37 BST 2012 Rank 93 Aligned Residues 95 % Identity 21% Template c2d9pA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:polyadenylate-binding protein 3; PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3 Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	P	P	P	G	W	E	G	P	H	P	Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		G	S	S	G	S	S	G	D	R	I	T	R	Y	Q	V	V	N	L	Y	V	K	N	L	D	D	G	I	D	D	E	R	L	R	K	A	F	S	P	F	G	T	I	T	S	A	K	V	M	M	E	.	G	G	R	S	K	G	F	G	F	V	C	F	S	S	P	E	E	A	T	K	A	V	T	E	M	N	G	R	I
Template Known Secondary structure														S	S											T	T									T	T	T	T	T	S											.	S	S	S										S	S												T	T		B
Template Predicted Secondary structure																																																				.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	P	G	R	L	L	G	V	C	C	S	V	D	N	C	R
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		V	A	.	T	K	P	L	Y	V	A	L	A	Q	R	K	E	E
Template Known Secondary structure		S	S	.	S	S	B							S	S
Template Predicted Secondary structure				.
Template SS confidence
		358	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions