Job Description A0AV96 Confidence 99.90% Date Fri May 25 09:48:37 BST 2012 Rank 14 Aligned Residues 159 % Identity 21% Template c2cjkA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4; PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna Resolution UNK

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C
Query Conservation																																									.
Alig confidence																																									.																																			.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		K	E	S	C	K	M	F	I	G	G	L	N	W	D	T	T	E	D	N	L	R	E	Y	F	G	K	Y	G	T	V	T	D	L	K	I	M	K	D	P	A	T	G	R	S	R	G	F	G	F	L	S	F	E	K	P	S	S	V	D	E	V	V	K	T	Q	H	I	L	D	G	K	V	I	D	.	.	.	.	.	.
Template Known Secondary structure			G	G	G						S			T	T											T	T	T												T	T	T	S	S			S							S	S	T									S					T	T					.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	D	N	C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q	L	W	G	H	Q	I
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		A	V	D	W	A	E	P	E	I	D	V	D	E	D	V	M	E	T	V	K	I	L	Y	V	R	N	L	M	I	E	T	T	E	D	T	I	K	K	S	F	G	Q	F	N	P	G	C	V	E	R	V	.	.	.	.	.	.	K	K	I	R	D	Y	A	F	V	H	F	T	S	R	E	D	A	V	H	A	M	N	N
Query Conservation																																																					.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																														.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.																																																																									.
Template Sequence		.	.	.	.	.	.	P	K	R	A	I	P	R	D	E	Q	D	K	T	G	K	I	F	V	G	G	I	G	P	D	V	R	P	K	E	F	E	E	F	F	S	Q	W	G	T	I	I	D	A	Q	L	M	L	D	K	D	T	G	Q	S	R	G	F	G	F	V	T	Y	D	S	A	D	A	V	D	R	V	C	.	Q
Template Known Secondary structure		.	.	.	.	.	.																							T	T												T	T	S			S							S	S	S	S	S	T	T	S								S	S									.
Template Predicted Secondary structure		.	.	.	.	.	.																																																																									.
Template SS confidence
								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	G	T	E	L	E	G	S	C	L	E	V	T	L	A	K	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	F	I	D	F	K	D	R	K	I	E	I	K	R	A	E	P	R
Template Known Secondary structure			S				S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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