Job Description A0AV96 Confidence 99.97% Date Fri May 25 09:48:37 BST 2012 Rank 5 Aligned Residues 191 % Identity 20% Template c1qm9A_ PDB info PDB header:ribonucleoprotein Chain: A: PDB Molecule:polypyrimidine tract-binding protein; PDBTitle: nmr, representative structure Resolution UNK

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		70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	C	E	V	F	V	G	K	I	.	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C	S	V
Query Conservation											.
Alig confidence											.																												.	.	.	.																													.
Template Conservation																																							.	.	.	.																													.
Template Sequence		N	S	V	L	L	V	S	N	L	N	P	E	R	V	T	P	Q	S	L	F	I	L	F	G	V	Y	G	D	V	Q	R	V	K	I	L	F	N	.	.	.	.	K	K	E	N	A	L	V	Q	M	A	D	G	N	Q	A	Q	L	A	M	S	H	L	N	G	H	K	L	H	.	G	K	P	I	R	I	T	L	S	K
Template Known Secondary structure												S	S	S												T	T				S					S	T	T	.	.	.	.		S	S							T	T	T											T	T				S	.	S
Template Predicted Secondary structure																																							.	.	.	.																													.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	C	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q	L	W	G	H	Q	I	A	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Q	N	V	Q	L	P	R	E	G	Q	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	L	T	K	D	Y	G	N	S	P	L	H
Template Known Secondary structure				S				S	S	S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S	S				T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90																																																							.	.	.	.	.	.	.	.	.	100	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		D	W	A	E	P	E	I	D	V	D	E	D	V	M	E	T	V	K	I	L	Y	V	R	N	L	M	I	E	T	T	E	D	T	I	K	K	S	F	G	Q	F	N	P	G	C	V	E	R	V	.	.	K	K	I	R	D	Y	A	F	V	H	F	T	S	R	E	D	A	V	H	A	M	N	N	L	N	G	T	E	L
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		R	F	K	K	P	G	S	K	N	F	Q	N	I	F	P	P	S	A	T	L	H	L	S	N	I	P	P	S	V	S	E	E	D	L	K	V	L	F	S	S	N	G	G	V	V	K	G	F	K	F	F	Q	K	D	R	K	M	A	L	I	Q	M	G	S	V	E	E	A	V	Q	A	L	I	D	L	H	N	H	D	L
Template Known Secondary structure		S	S	S	S							S																T	T													T	T	S								S	S	T	T	S	S							S	S												T	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
			307	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	G	S	C	L	E	V	T	L	A	K	P	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		G	E	N	H	H	L	R	V	S	F	S	K	S	T
Template Known Secondary structure		S	S			S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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