Job Description A0AV96 Confidence 99.89% Date Fri May 25 09:48:37 BST 2012 Rank 15 Aligned Residues 166 % Identity 22% Template c1fnxH_ PDB info PDB header:immune system/rna Chain: H: PDB Molecule:hu antigen c; PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element Resolution UNK

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		Q	R	G	C	E	V	F	V	G	K	I	P	R	D	V	Y	E	D	E	L	V	P	V	F	E	A	V	G	R	I	Y	E	L	R	L	M	M	D	F	.	D	G	K	N	R	G	Y	A	F	V	M	Y	C	H	K	H	E	A	K	R	A	V	R	E	L	N	N	Y	E	I	R	P	G	R	L	L	G	V	C	C
Query Conservation																																									.
Alig confidence																																									.																																.
Template Conservation																																																																									.
Template Sequence		D	S	K	T	N	L	I	V	N	Y	L	P	Q	N	M	T	Q	D	E	F	K	S	L	F	G	S	I	G	D	I	E	S	C	K	L	V	R	D	K	I	T	G	Q	S	L	G	Y	G	F	V	N	Y	S	D	P	N	D	A	D	K	A	I	N	T	L	N	G	L	K	L	Q	.	T	K	T	I	K	V	S	Y
Template Known Secondary structure				T	T						S			T	T	S											S	S	S											S	S	S					S							S	S																	S	.	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.
		147	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		S	V	D	N	C	.	.	.	.	.	.	R	L	F	I	G	G	I	P	K	M	K	K	R	E	E	I	L	E	E	I	A	K	V	T	E	G	V	L	D	V	I	V	Y	A	S	A	A	D	K	M	K	N	R	G	F	A	F	V	E	Y	E	S	H	R	A	A	A	M	A	R	R	K	L	M	P	G	R	I	Q
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																						.	.
Template Conservation																																																		.	.
Template Sequence		A	R	P	S	S	A	S	I	R	D	A	N	L	Y	V	S	G	L	P	K	T	M	S	Q	K	E	M	E	Q	L	F	S	Q	Y	G	R	I	I	T	S	R	I	L	L	D	Q	A	T	.	.	G	V	S	R	G	V	G	F	I	R	F	D	K	R	I	E	A	E	E	A	I	K	G	L	N	G	Q	K	P	L
Template Known Secondary structure				S			S	S		S											T	T												T	T	S											S	S	S	.	.	S											S											T	T						S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	G	H	Q	I	A	V	D	W	A	E	P	E	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	A	E	P	I	T	V	K	F	A	N	N	P	S	Q
Template Known Secondary structure		S		S		S									S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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