Job Description P08100 Confidence 100.00% Date Wed Jun 6 09:21:49 BST 2012 Rank 13 Aligned Residues 328 % Identity 22% Template c3aynB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid isorhodopsin Resolution 2.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		V	V	R	S	P	F	E	Y	P	Q	Y	Y	L	A	E	P	W	Q	F	S	M	L	A	A	Y	M	F	L	L	I	V	L	G	F	P	I	N	F	L	T	L	Y	V	T	V	Q	H	K	K	L	R	T	P	L	N	Y	I	L	L	N	L	A	V	A	D	L	F	M	V	L	G	G	.	F	T	S	T	L	Y	T
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		S	I	V	V	H	P	H	W	R	E	F	D	Q	V	P	D	A	V	Y	Y	S	L	G	I	F	I	G	I	C	G	I	I	G	C	G	G	N	G	I	V	I	Y	L	F	T	K	T	K	S	L	Q	T	P	A	N	M	F	I	I	N	L	A	F	S	D	F	T	F	S	L	V	N	G	F	P	L	M	T	I	S
Template Known Secondary structure		S	S								T	S																																					G	G	G			T	T																			S	T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		S	L	H	G	Y	F	V	F	G	P	T	G	C	N	L	E	G	F	F	A	T	L	G	G	E	I	A	L	W	S	L	V	V	L	A	I	E	R	Y	V	V	V	C	K	P	M	S	N	F	R	F	.	G	E	N	H	A	I	M	G	V	A	F	T	W	V	M	A	L	A	C	A	A	P	P	L	A	G	W	S
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		C	F	L	K	K	W	I	F	G	F	A	A	C	K	V	Y	G	F	I	G	G	I	F	G	F	M	S	I	M	T	M	A	M	I	S	I	D	R	Y	N	V	I	G	R	P	M	A	A	S	K	K	M	S	H	R	R	A	F	I	M	I	I	F	V	W	L	W	S	V	L	W	A	I	G	P	I	F	G	W	G
Template Known Secondary structure				T	T	S			S																																		T	T	S		T	T	T																														T	S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.											.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Y	I	P	E	G	L	Q	C	S	C	G	I	D	Y	Y	T	L	K	P	E	V	N	N	E	S	F	V	I	Y	M	F	V	V	H	F	T	I	P	M	I	I	I	F	F	C	Y	G	Q	L	.	.	.	.	.	.	.	.	.	.	V	F	T	V	K	E	A	A	A	Q	Q	Q	E	S	A	T	T	Q	K	A
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	T	L	E	G	V	L	C	N	C	S	F	D	Y	I	S	R	D	S	T	T	R	S	N	I	L	C	M	F	I	L	G	F	F	G	P	I	L	I	I	F	F	C	Y	F	N	I	V	M	S	V	S	N	H	E	K	E	M	A	A	M	A	K	R	L	N	A	K	E	L	R	K	A	Q	A	G	A	N	A
Template Known Secondary structure							T	T	S	S	S						S			S															T																T	T													S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	E	V	T	R	M	V	I	I	M	V	I	A	F	L	I	C	W	V	P	Y	A	S	V	A	F	Y	I	F	T	H	Q	G	S	N	F	G	P	I	F	M	T	I	P	A	F	F	A	K	S	A	A	I	Y	N	P	V	I	Y	I	M	M	N	K	Q	F	R	N	C	M	L	T	T	I	C	C	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	R	L	A	K	I	S	I	V	I	V	S	Q	F	L	L	S	W	S	P	Y	A	V	V	A	L	L	A	Q	F	G	P	L	E	W	V	T	P	Y	A	A	Q	L	P	V	M	F	A	K	A	S	A	I	H	N	P	M	I	Y	S	V	S	H	P	K	F	R	E	A	I	S	Q	T	F	P	W	V	L	T
Template Known Secondary structure																																	S		T	T	T																G	G	G								T	T										T	T		G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	G	D	D	E	A	S	A	T	V	S	K	T	E	T	S	Q	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	C	Q	F	D	D	K	E	T	E	D	D	K	D	A	E	T	E	I	P
Template Known Secondary structure		T	T				G	G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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