Job Description P08100 Confidence 100.00% Date Wed Jun 6 09:21:49 BST 2012 Rank 4 Aligned Residues 342 % Identity 18% Template c2ksaA_ PDB info PDB header:neuropeptide receptor/neuropeptide Chain: A: PDB Molecule:substance-p receptor; PDBTitle: substance p in dmpc/chaps isotropic q=0.25 bicelles as a ligand for2 nk1r Resolution UNK

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	F	Y	V	P	F	S	N	A	T	G	V	V	R	S	P	F	E	Y	P	Q	Y	Y	L	A	E	P	W	Q	F	S	M	L	A	A	Y	M	F	L	L	I	V	L	G	F	P	I	N	F	L	T	L	Y	V	T	V	Q	H	K	K	L	R	T	P	L	N	Y	I	L	L	N	L	A	V	A	D	L	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	V	L	P	V	D	S	D	L	S	P	N	I	S	T	N	T	S	E	P	N	Q	F	V	Q	P	A	W	Q	I	V	L	W	A	A	A	Y	T	V	I	V	V	T	S	V	V	G	N	V	V	V	M	W	I	I	L	A	H	K	R	M	R	T	V	T	N	Y	F	L	V	N	L	A	F	A	E	A	S	M
Template Known Secondary structure				S	S	S	S	S			S	S	T	T				T	T	T	S			T	T	T	S																																		T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		V	L	G	G	F	T	S	T	L	Y	T	S	L	H	G	Y	F	V	F	G	P	T	G	C	N	L	E	G	F	F	A	T	L	G	G	E	I	A	L	W	S	L	V	V	L	A	I	E	R	Y	V	V	V	C	K	P	M	S	N	F	R	F	.	G	E	N	H	A	I	M	G	V	A	F	T	W	V	M	A	L
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		A	A	F	N	T	V	V	N	F	T	Y	A	V	H	N	E	W	Y	Y	G	L	F	Y	C	K	F	H	N	F	F	P	I	A	A	V	F	A	S	I	Y	S	M	T	A	V	A	F	D	R	Y	M	A	I	I	H	P	L	Q	P	R	L	S	A	T	A	T	K	V	V	I	C	V	I	W	V	L	A	L	L	L
Template Known Secondary structure				T												T	S		S	S																																							T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	A	A	P	P	L	A	G	W	S	R	Y	I	P	E	G	L	Q	C	S	C	G	I	D	Y	Y	T	L	K	P	E	V	N	N	E	S	F	V	I	Y	M	F	V	V	H	F	T	I	P	M	I	I	I	F	F	C	Y	G	Q	L	V	F	T	V	K	E	A	A	A	Q	Q	Q	E	S	A	T	T	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	P	Q	G	Y	Y	S	T	T	E	T	M	P	S	R	V	V	C	M	I	E	W	P	E	H	P	N	K	I	Y	E	K	V	Y	H	I	C	V	T	V	L	I	Y	F	L	P	L	L	V	I	G	Y	A	Y	T	V	V	G	I	T	L	W	A	S	E	I	P	G	D	S	S	D	R	Y	H	E	Q	V	S
Template Known Secondary structure			T	T	T	T	T	T	S				B		T	T		S	S	B					S				T	T	T	T													T																	S	S		S				S	S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		A	E	K	E	V	T	R	M	V	I	I	M	V	I	A	F	L	I	C	W	V	P	Y	A	S	V	A	F	Y	I	F	T	H	Q	G	S	N	F	G	P	.	.	.	I	F	M	T	I	P	A	F	F	A	K	S	A	A	I	Y	N	P	V	I	Y	I	M	M	N	K	Q	F	R	N	C	M	L	T	T	I	C
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		A	K	R	K	V	V	K	M	M	I	V	V	V	C	T	F	A	I	C	W	L	P	F	H	I	F	F	L	L	P	Y	I	N	P	D	L	Y	L	K	K	F	I	Q	Q	V	Y	L	A	I	M	W	L	A	M	S	S	T	M	Y	N	P	I	I	Y	C	C	L	N	D	R	F	R	L	G	F	K	H	A	F	R
Template Known Secondary structure																																		S	T	T	S		S	S	S																																								S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	K	N	P	L	G	D	D	E	A	S	A	T	V	S	K	T	E	T	S	Q	V	A	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	C	P	F	I	S	A	G	D	Y	E	G	L	E	M	K	S	T	R	Y	L	Q	T	Q	G	S
Template Known Secondary structure		S	S					T	T			S	S		S	S	S	S	S	S		S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions