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Job DescriptionP42680
Confidence100.00%DateFri May 25 09:36:11 BST 2012
Rank43Aligned Residues247
% Identity20%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   367..370.........380.........390.........400......... 410.........420.........430.........440...
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Query Sequence  PSELTFMRELGSGLFGVVRLGKWRAQYKVAIKAIREGAMCEED. . . FIEEAKVMMKLTHPKLVQLYGVCTQQKPIYIVTE
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVL. AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD
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TT.TTS
S


BTTB


SS
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   10.........20.........30.. .......40.........50.........60.........70.........80........
 
   444.....450.........460.........470.........480.........490.........500.. .......510.........520
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Query Sequence  FMERGCLLNFLRQRQGHFSRDVLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSEAGV. . . VKVSDFGMARYVLDDQYT
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Template Sequence  LVTGGELFEDIVARE. YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAI. EVEGEQQ
Template Known Secondary structure 

B

B
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SSTTSBSSTT




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   91........100..... ....110.........120.........130.........140.........150.........160. .......
 
   521........530.........540.........550.........560.........570.........580... ......590.......
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Query Sequence  SSSGAKFPVKWCPPEVFNYSRFSSKSDVWSFGVLMWEVFTEGRMPFEKYTNYEVVTMVTRGHR. . . LYQPKLASNYVYEV
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Template Sequence  AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDL
Template Known Secondary structure  B


S
S
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   169170.........180.........190.........200........ .210.........220.........230.........240.......
 
   598.600.........610.......
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Query Sequence  MLRCWQEKPEGRPSFEDLLR
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Template Sequence  INKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   248.250.........260.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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