Job Description P42680 Confidence 100.00% Date Fri May 25 09:36:11 BST 2012 Rank 132 Aligned Residues 253 % Identity 17% Template c3q60A_ PDB info PDB header:transferase Chain: A: PDB Molecule:rop5b; PDBTitle: crystal structure of virulent allele rop5b pseudokinase domain bound2 to atp Resolution 1.72 Å

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		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.					410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																							.																				.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence																							.																				.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		L	T	F	M	R	E	L	G	S	G	L	F	G	V	V	R	L	G	K	W	R	.	A	Q	Y	K	V	A	I	K	A	I	R	E	G	A	M	C	E	E	D	.	.	.	.	F	I	E	E	A	K	V	M	M	K	L	T	H	P	K	L	V	Q	L	Y	G	V	C	T	Q	Q	K	P	.	.	.	.	.	.	.
Query Conservation																							.																				.	.	.	.																													.	.	.	.	.	.	.
Alig confidence																							.																				.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	L	V	E	P	L	R	V	G	D	R	S	V	V	F	L	V	R	D	V	E	R	L	E	D	F	A	L	K	V	F	T	M	G	A	E	N	S	R	S	E	L	E	R	L	H	E	A	T	F	A	A	A	R	L	L	G	R	L	L	L	P	S	D	A	V	A	V	Q	S	Q	P	P	F	A	Q	L	S	P
Template Known Secondary structure												S	S									T	T	T	T												S	T	T																						B										T	T	S		S	S	S	B		S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
								438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.							.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	I	Y	I	V	T	E	F	M	E	R	G	C	L	L	N	F	L	R	Q	.	.	.	.	.	.	R	Q	G	H	F	S	R	D	V	L	L	S	M	C	Q	D	V	C	E	G	M	E	Y	L	E	R	N	S	F	I	H	R	D	L	A	A	R	N	C	L	V	S	E	A	G	V	V	K	V
Query Conservation		.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.									.											.	.	.	.	.	.
Template Conservation																.
Template Sequence		G	Y	A	V	A	N	Y	L	L	L	M	P	A	A	.	S	V	D	L	E	L	L	F	S	T	L	D	F	V	Y	V	F	R	G	D	E	G	I	L	A	L	H	I	L	T	A	Q	L	I	R	L	A	A	N	L	Q	S	K	G	L	V	H	G	H	F	T	P	D	N	L	F	I	M	P	D	G	R	L	M	L
Template Known Secondary structure																.	S													S																													T	T				T	T		S	G	G	G					T	T	S
Template Predicted Secondary structure																.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.			.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		S	D	F	G	M	A	R	Y	V	L	D	D	Q	Y	T	S	S	S	G	A	K	F	P	V	K	W	C	P	P	E	V	F	.	.	N	Y	S	R	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	V	F	T	E	G	R	M	P	F	E	K	Y	T	N	Y	E	V	V	T	M	V	T	R	G	H	R
Query Conservation																																		.	.
Alig confidence													.	.	.	.																		.	.																								.
Template Conservation													.	.	.	.																																											.
Template Sequence		G	D	V	S	A	L	W	K	V	G	T	.	.	.	.	R	G	P	A	S	S	V	P	V	T	Y	A	P	R	E	F	L	N	A	S	T	A	T	F	T	H	A	L	N	A	W	Q	L	G	L	S	I	Y	R	V	W	C	.	L	F	L	P	F	G	L	V	T	P	G	I	K	G	S	W	K	R	P	S	L	R
Template Known Secondary structure				G	G	G				T	T		.	.	.	.				G	G	G	S		G	G	G							T		S																							.	S	S		S	T	T	B			T	T		T	T				B			T	T
Template Predicted Secondary structure													.	.	.	.																																											.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.					.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		584	.	.	.	.									.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.			.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																														.	.
Query SS confidence							.	.	.	.	.	.	.	.																														.	.
Query Sequence		L	Y	Q	P	K	.	.	.	.	.	.	.	.	L	A	S	N	Y	V	Y	E	V	M	L	R	C	W	Q	E	K	P	E	G	R	P	S	F	E	D	L	L	R	.	.	T	I	D	E	L	V	E	C	E	E	T
Query Conservation							.	.	.	.	.	.	.	.																														.	.
Alig confidence							.	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		V	P	G	T	D	S	L	A	F	G	S	C	T	P	L	P	D	F	V	K	T	L	I	G	R	F	L	N	F	D	R	R	R	R	L	L	P	L	E	A	M	E	T	P	E	F	L	Q	L	Q	N	E	I	S	S
Template Known Secondary structure		S					S				T	T	S	S														T		S	S	T	T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions