Job Description Q9H6Q3 Confidence 99.70% Date Thu Apr 26 09:38:43 BST 2012 Rank 97 Aligned Residues 80 % Identity 23% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.
Query Sequence		H	G	W	L	Y	E	G	L	S	R	E	K	A	E	E	L	L	L	L	P	G	N	P	G	G	A	F	L	I	R	E	S	Q	T	R	R	G	S	Y	S	L	S	V	R	L	S	R	P	A	S	W	D	R	I	R	H	Y	R	I	H	C	L	D	N	.	.	.	.	.	.	G	W	L	Y	I	S	P	R	L	T
Query Conservation																																																																		.	.	.	.	.	.
Alig confidence							.													.	.																													.	.	.	.													.	.	.	.	.	.
Template Conservation							.													.	.																													.	.	.	.
Template Sequence		H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	.	.	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	.	.	.	.	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R
Template Known Secondary structure			T	T			.												T	.	.	T	S		T	T								S	S		T	T										T	T	.	.	.	.											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure							.													.	.																													.	.	.	.
Template SS confidence
		6	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	S	L	Q	A	L	V	D	H	Y	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	H	D	L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure			S	S								T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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