Email l.a.kelley@imperial.ac.uk Description A0AUZ9 Date Sat Jun 16 10:19:00 BST 2012 Unique Job ID 438542787989b764

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2y0mB_ 89.8 43 PDB header:transcription Chain: B: PDB Molecule:male-specific lethal 1 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and mof 2 c2wb6A_ 53.5 70 PDB header:viral protein Chain: A: PDB Molecule:afv1-102; PDBTitle: crystal structure of afv1-102, a protein from the acidianus2 filamentous virus 1 3 d2gykb1 52.7 42 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 4 c7ceiB_ 50.7 42 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 5 d2jb0b1 47.5 50 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 6 d1r6ta1 41.0 17 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 7 d1tafb_ 39.7 18 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 8 c1zauA_ 34.9 32 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis 9 d1v9pa3 33.4 29 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 10 d1b04a_ 30.6 40 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 11 c3thfA_ 29.6 18 PDB header:actin-binding protein/protein binding Chain: A: PDB Molecule:protein shroom; PDBTitle: crystal structure of the sd2 domain from drosophila shroom 12 c3bacA_ 27.1 39 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase 13 d1dgsa3 25.4 29 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 14 d1ta8a_ 24.8 42 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 15 c2l5bA_ 22.6 55 PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles 16 c1dgsB_ 20.2 29 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 17 c3m6wA_ 19.2 24 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 18 c3v62F_ 18.6 41 PDB header:protein binding/dna binding protein Chain: F: PDB Molecule:atp-dependent dna helicase srs2; PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164 19 c1dipA_ 18.3 19 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 20 c2fgtA_ 16.3 56 PDB header:signaling protein Chain: A: PDB Molecule:two-component system yycf/yycg regulatory PDBTitle: crystal structure of yych from bacillus subtilis 21 d1fyja_ not modelled 16.1 22 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 22 c1mv4B_ not modelled 15.9 36 PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin 23 c3eb8A_ not modelled 15.8 78 PDB header:hydrolase Chain: A: PDB Molecule:cysteine protease-like vira; PDBTitle: vira 24 d1lg7a_ not modelled 15.6 20 Fold:VSV matrix protein Superfamily:VSV matrix protein Family:VSV matrix protein 25 c3ee1A_ not modelled 15.3 78 PDB header:hydrolase Chain: A: PDB Molecule:effector protein vira; PDBTitle: novel fold of vira, a type iii secretion system effector protein from2 shigella flexneri 26 c3m4xA_ not modelled 13.3 24 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 27 c3tweA_ not modelled 13.3 31 PDB header:unknown function Chain: A: PDB Molecule:alpha4h; PDBTitle: crystal structure of the de novo designed peptide alpha4h 28 c2l1qA_ not modelled 13.0 36 PDB header:antimicrobial protein Chain: A: PDB Molecule:liver-expressed antimicrobial peptide 2; PDBTitle: solution structure of human liver expressed antimicrobial peptide 2 29 c3tweB_ not modelled 12.9 31 PDB header:unknown function Chain: B: PDB Molecule:alpha4h; PDBTitle: crystal structure of the de novo designed peptide alpha4h 30 d1mzga_ not modelled 12.9 19 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 31 d1csca_ not modelled 12.3 19 Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase 32 c2qrlA_ not modelled 12.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase, nad+, l-lysine- PDBTitle: crystal structure of oxalylglycine-bound saccharopine2 dehydrogenase (l-lys forming) from saccharomyces cerevisiae 33 d1fx7a3 not modelled 11.7 28 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 34 d1fzya_ not modelled 10.6 36 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 35 d2ob5a1 not modelled 10.6 13 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 36 c2yg8B_ not modelled 10.4 19 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 37 c1nh1A_ not modelled 10.2 13 PDB header:avirulence protein Chain: A: PDB Molecule:avirulence b protein; PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae. 38 d1nh1a_ not modelled 10.2 13 Fold:Antivirulence factor Superfamily:Antivirulence factor Family:Antivirulence factor 39 c1zg2A_ not modelled 10.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2. 40 c2djvA_ not modelled 9.9 27 PDB header:protein binding Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 methionyl-trna synthetase 41 d2f76x1 not modelled 9.3 27 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Mason-Pfizer monkey virus matrix protein 42 d1d2da_ not modelled 9.3 24 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 43 c3bvhE_ not modelled 9.2 21 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 44 c2hinA_ not modelled 9.1 50 PDB header:transcription Chain: A: PDB Molecule:repressor protein; PDBTitle: structure of n15 cro at 1.05 a: an ortholog of lambda cro2 with a completely different but equally effective3 dimerization mechanism 45 c2frxD_ not modelled 9.0 14 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 46 d1n7va_ not modelled 8.8 29 Fold:Adsorption protein p2 Superfamily:Adsorption protein p2 Family:Adsorption protein p2 47 d1v1oa2 not modelled 8.6 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain 48 c3dxeB_ not modelled 8.5 48 PDB header:protein binding Chain: B: PDB Molecule:amyloid beta a4 protein; PDBTitle: crystal structure of the intracellular domain of human app2 (t668a mutant) in complex with fe65-ptb2 49 c3fg9B_ not modelled 8.3 45 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 50 c2cxiA_ not modelled 8.3 26 PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of an n-terminal fragment of the phenylalanyl-trna2 synthetase beta-subunit from pyrococcus horikoshii 51 d1uuja_ not modelled 8.3 29 Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 52 d1mwpa_ not modelled 8.1 33 Fold:SRCR-like Superfamily:A heparin-binding domain Family:A heparin-binding domain 53 c1nh2C_ not modelled 8.1 33 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 54 d1nh2c_ not modelled 8.1 33 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 55 c3jslA_ not modelled 8.0 14 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus 56 c2x9oA_ not modelled 7.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:15,16- dihydrobiliverdin-ferredoxin oxidoreductase; PDBTitle: structure of 15, 16- dihydrobiliverdin:ferredoxin2 oxidoreductase (peba) 57 c2g18K_ not modelled 7.6 5 PDB header:oxidoreductase Chain: K: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of nostoc sp. 7120 phycocyanobilin:ferredoxin2 oxidoreductase (pcya) apoprotein 58 c3ktmB_ not modelled 7.6 33 PDB header:cell adhesion, signaling protein Chain: B: PDB Molecule:amyloid beta a4 protein; PDBTitle: structure of the heparin-induced e1-dimer of the amyloid precursor2 protein (app) 59 c3ec8A_ not modelled 7.1 42 PDB header:cell adhesion Chain: A: PDB Molecule:putative uncharacterized protein flj10324; PDBTitle: the crystal structure of the ra domain of flj10324 (radil) 60 c2w2rA_ not modelled 7.0 14 PDB header:viral protein Chain: A: PDB Molecule:matrix protein; PDBTitle: structure of the vesicular stomatitis virus matrix protein 61 c2jvhA_ not modelled 7.0 19 PDB header:immune system Chain: A: PDB Molecule:igg-binding protein sbi; PDBTitle: structure of c3-binding domain 4 of s. aureus protein sbi 62 c2z5hB_ not modelled 6.9 33 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 63 d2z8la2 not modelled 6.6 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain 64 c2ao9H_ not modelled 6.6 16 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:phage protein; PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579 65 c3d5jB_ not modelled 6.6 26 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-2, mitochondrial; PDBTitle: structure of yeast grx2-c30s mutant with glutathionyl mixed disulfide 66 c3h0gA_ not modelled 6.6 39 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 67 c3f2rA_ not modelled 6.3 28 PDB header:transferase Chain: A: PDB Molecule:choline kinase alpha; PDBTitle: crystal structure of human choline kinase alpha in complex2 with hemicholinium-3 68 d2hrkb1 not modelled 6.3 16 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like 69 c2wjvE_ not modelled 6.3 40 PDB header:hydrolase Chain: E: PDB Molecule:regulator of nonsense transcripts 2; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 70 c2v1lA_ not modelled 6.2 57 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein 71 c2wcuB_ not modelled 6.1 15 PDB header:isomerase Chain: B: PDB Molecule:protein fucu homolog; PDBTitle: crystal structure of mammalian fucu 72 c3cuxA_ not modelled 6.0 43 PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design 73 c1ywlA_ not modelled 6.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36 74 d1eg3a1 not modelled 6.0 38 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 75 c3lx6B_ not modelled 6.0 20 PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 2457t 76 c3iydD_ not modelled 5.9 14 PDB header:transcription/dna Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 77 c2q6qB_ not modelled 5.9 67 PDB header:cell cycle Chain: B: PDB Molecule:spindle pole body component spc42; PDBTitle: crystal structure of spc42p, a critical component of spindle pole body2 in budding yeast 78 d1axib1 not modelled 5.8 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 79 d1nhpa3 not modelled 5.8 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 80 c2l1uA_ not modelled 5.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 81 c2w56B_ not modelled 5.7 43 PDB header:unknown function Chain: B: PDB Molecule:vc0508; PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island 82 c2f9jP_ not modelled 5.7 36 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 83 c2k58B_ not modelled 5.7 26 PDB header:transport protein Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2; PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit 84 d1eita_ not modelled 5.7 100 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 85 d2qdyb1 not modelled 5.7 25 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 86 c1z9vA_ not modelled 5.5 30 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein mth0776; PDBTitle: solution structure of mth0776 from methanobacterium2 thermoautotrophicum (strain h) 87 c3ax1A_ not modelled 5.5 9 PDB header:protein binding Chain: A: PDB Molecule:serrate rna effector molecule; PDBTitle: molecular insights into mirna processing by arabidopsis serrate 88 d1yh2a1 not modelled 5.5 36 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 89 c1x4qA_ not modelled 5.4 43 PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3) 90 d1qrjb1 not modelled 5.3 16 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 91 c1v1oB_ not modelled 5.3 36 PDB header:virulence factor Chain: B: PDB Molecule:exotoxin 1; PDBTitle: staphylococcal superantigen-like protein 7 92 c2k72A_ not modelled 5.3 33 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-23; PDBTitle: solution nmr structure of toxin-like potassium channel2 blocking domain in mmp23 93 d2etda1 not modelled 5.3 14 Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like 94 d2tssa2 not modelled 5.3 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain 95 c4dzoA_ not modelled 5.3 29 PDB header:cell cycle Chain: A: PDB Molecule:mitotic spindle assembly checkpoint protein mad1; PDBTitle: structure of human mad1 c-terminal domain reveals its involvement in2 kinetochore targeting 96 d2eiaa1 not modelled 5.2 16 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 97 c2w4rB_ not modelled 5.1 23 PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58; PDBTitle: crystal structure of the regulatory domain of human lgp2 98 c2b9sA_ not modelled 5.1 8 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 99 c3l4nA_ not modelled 5.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-6; PDBTitle: crystal structure of yeast monothiol glutaredoxin grx6