Phyre 2 alignment of A0AUZ9 with c3iydD_

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Job Description | A0AUZ9
Confidence | 5.91% | Date | Sat Jun 16 10:19:00 BST 2012
Rank | 76 | Aligned Residues | 28
% Identity | 14% | Template | c3iydD_
PDB info | PDB header:transcription/dna | Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; | PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
Resolution | 19.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 766 | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | E | S | S | Y | D | I | D | N | I | V | I | P | M | S | L | V | A | P | A | K | L | E | K | L | Q | Y | K | E | I | L | T | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | G | P | Y | L | R | L | H | Q | C | G | L | P | K | K | M | A | L | . | . | . | . | . | E | L | F | K | P | F | I | Y | G | K
Template Known Secondary structure |  |  |  | T | T |  |  | T | T |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 357 | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . |  |  |  |  |  | . | . | . | . | . | 380 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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