Phyre 2 alignment of A0AUZ9 with c3dxeB_

Return to main results | Retrieve Phyre Job Id

Job Description | A0AUZ9
Confidence | 8.54% | Date | Sat Jun 16 10:19:00 BST 2012
Rank | 48 | Aligned Residues | 21
% Identity | 48% | Template | c3dxeB_
PDB info | PDB header:protein binding | Chain: B: PDB Molecule:amyloid beta a4 protein; | PDBTitle: crystal structure of the intracellular domain of human app2 (t668a mutant) in complex with fe65-ptb2
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 956 | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . |  |  | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Query Sequence |  | V | P | E | N | G | H | H | P | K | K | Q | S | D | G | M | E | . | . | E | Y | K | T | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | P | E | E | R | H | L | S | K | M | Q | Q | N | G | Y | E | N | P | T | Y | K | F | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 668 | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions