Phyre 2 alignment of A0AUZ9 with c1x4qA_

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Job Description | A0AUZ9
Confidence | 5.36% | Date | Sat Jun 16 10:19:00 BST 2012
Rank | 89 | Aligned Residues | 23
% Identity | 43% | Template | c1x4qA_
PDB info | PDB header:rna binding protein | Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; | PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 32 | . | . | . | . | . | . |  | . | 40 | . |  | . | . | . | . | . | . | . | . | 50 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | S | P | R | T | V | D | E | . | K | L | K | . | G | D | T | F | S | Q | M | L | G | F | P | T | P
Query Conservation |  |  |  |  |  |  |  |  | . |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | K | R | E | L | D | E | L | K | P | W | I | E | K | T | V | K | R | V | L | G | F | S | E | P
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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