17/06/2012 16:35:26 : INFO  : Run start: Sun Jun 17 16:35:26 BST 2012
17/06/2012 16:35:27 : INFO  : Initialised job
17/06/2012 16:35:27 : INFO  : Initialised job:
Sequence
>batch____
MTPALREATAKGISFSSLPSTMESDKMLYMESPRTVDEKLKGDTFSQMLGFPTPEPTLNT
NFVNLKHFGSPQSSKHYQTVFLMRSNSTLNKHNENYKQKKLGEPSCNKLKNILYNGSNIQ
LSKICLSHSEEFIKKEPLSDTTSQCMKDVQIILDSNITKDTNVDKVQLQNCKWYQENALL
DKVTDAEIKKGLLHCTQKKIVPGHSNVPVSSSAAEKEEEVHARLLHCVSKQKILLSQARR
TQKHLQMLLAKHVVKHYGQQMKLSMKHQLPKMKTFHEPTTILGNSLPKCTEIKPEVNTLT
AENKLWDDAKNGFARCTAAEIQRFAFSATGLLSHVEEGLDSDATDSSSDDDLDEYTLRKN
VAVNCSTEWKWLVDRARVGSRWTWLQAQISDLECKIQQLTDIHRQIRASKGIVVLEECQL
PKDILKKQMQFADQAASLNILGNPQVPQECQDPVPEQDFEMSPSSPTLLLRNIEKQSAQL
TEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGIYRSASENLDELSSSSSWLLNQKHSKK
KRKDRTRLKSSSLTFMSTSARTRPLQSFHKRKLYRLSPTFYWTPQTLPSKETAFLNTTQM
PCLQSASTWSSYEHNSESYLLREHVSELDSSFHSVLSLPSDVPLHFHFETLLKKTEIKGN
LAENKFVDEYIISPSPVHSTLNQWRNGYSPICKPQIRSESSAQLLQGRKKRHLSETALGE
RTKLEESDFQHTESGSHSNFTAVSNVNVLSRIQNSSRNTARRRLRSESSYDIDNIVIPMS
LVAPAKLEKLQYKEILTPSWRMVVLQPLDEYNLGKEEIEDLSDEVFSLRHKKYEEREQAR
WSLWEQSKWHRRNSRAYSKNVEGQDLLLKEYPNNFSSSQQCAAASPPGLPSENQDLCAYG
LPSLNQSQETKSLWWERRAFPLKGEDMAALLCQDEKKDQVERSSTAFHGEIFGTSVPENG
HHPKKQSDGMEEYKTFGLGLTNVKKNR

17/06/2012 16:35:27 : INFO  : Checked sequence
17/06/2012 16:35:27 : INFO  : Finding homologues with PSI-BLAST
17/06/2012 16:35:27 : INFO  : PSI-BLAST 3 iterations
17/06/2012 16:38:16 : INFO  : PSI-BLAST 5 iterations
17/06/2012 16:42:35 : INFO  : Finished PSI-BLAST
17/06/2012 16:42:35 : INFO  : Running Buildali to generate a3m file
17/06/2012 16:46:46 : INFO  : Converting to HMM
17/06/2012 16:46:47 : INFO  : Calibrating HMM
17/06/2012 16:47:07 : INFO  : Searching HMM database
17/06/2012 17:03:33 : INFO  : Finished buildali
17/06/2012 17:03:33 : INFO  : Predicting secondary structure
17/06/2012 17:03:33 : INFO  : Predicted secondary structure (PSI-Pred)
17/06/2012 17:03:33 : INFO  : Predicting Disordered regions
17/06/2012 17:03:33 : INFO  : Predicted Disorder (Disopred)
17/06/2012 17:03:33 : INFO  : Running memsat_svm check
17/06/2012 17:04:09 : INFO  : Globular protein
17/06/2012 17:04:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '438542787989b764'
17/06/2012 17:04:09 : INFO  : Initialising fold library search
17/06/2012 17:04:09 : INFO  : Initialised search input
17/06/2012 17:04:09 : INFO  : Building Ensemble models
17/06/2012 17:04:10 : INFO  : Building hh.c2y0mB_.model.1.pdb
17/06/2012 17:04:10 : INFO  : Building hh.c2wb6A_.model.2.pdb
17/06/2012 17:04:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/438542787989b764/hh.c2wb6A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/438542787989b764/c2wb6A_.2.pdb
17/06/2012 17:04:10 : INFO  : Building hh.d2gykb1.model.3.pdb
17/06/2012 17:04:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/438542787989b764/hh.d2gykb1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/438542787989b764/d2gykb1.3.pdb
17/06/2012 17:04:10 : INFO  : Building c2y0mB_.1.pdb
17/06/2012 17:04:11 : INFO  : Building c2wb6A_.2.pdb
17/06/2012 17:04:11 : INFO  : Building d2gykb1.3.pdb
17/06/2012 17:04:11 : INFO  : Building c7ceiB_.4.pdb
17/06/2012 17:04:11 : INFO  : Building d2jb0b1.5.pdb
17/06/2012 17:04:12 : INFO  : Building d1r6ta1.6.pdb
17/06/2012 17:04:12 : INFO  : Building d1tafb_.7.pdb
17/06/2012 17:04:12 : INFO  : Building c1zauA_.8.pdb
17/06/2012 17:04:13 : INFO  : Building d1v9pa3.9.pdb
17/06/2012 17:04:13 : INFO  : Building d1b04a_.10.pdb
17/06/2012 17:04:13 : INFO  : Building c3thfA_.11.pdb
17/06/2012 17:04:14 : INFO  : Building c3bacA_.12.pdb
17/06/2012 17:04:14 : INFO  : Building d1dgsa3.13.pdb
17/06/2012 17:04:14 : INFO  : Building d1ta8a_.14.pdb
17/06/2012 17:04:15 : INFO  : Building c2l5bA_.15.pdb
17/06/2012 17:04:15 : INFO  : Building c1dgsB_.16.pdb
17/06/2012 17:04:15 : INFO  : Building c3m6wA_.17.pdb
17/06/2012 17:04:15 : INFO  : Building c3v62F_.18.pdb
17/06/2012 17:04:16 : INFO  : Building c1dipA_.19.pdb
17/06/2012 17:04:16 : INFO  : Building c2fgtA_.20.pdb
17/06/2012 17:04:19 : INFO  : Finished HH model building
17/06/2012 17:04:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/06/2012 17:04:21 : INFO  : html domain output complete ID '438542787989b764'
17/06/2012 17:06:10 : INFO  : Run end  : Sun Jun 17 17:06:10 BST 2012
