Phyre 2 Results for A0AUZ9

Email | l.a.kelley@imperial.ac.uk
Description | A0AUZ9
Date | Sat Jun 16 10:19:00 BST 2012
Unique Job ID | 438542787989b764

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2y0mB_ |
|  | 89.8 | 43 | PDB header:transcription Chain: B: PDB Molecule:male-specific lethal 1 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and mof
2 | c2wb6A_ |
|  | 53.5 | 70 | PDB header:viral protein Chain: A: PDB Molecule:afv1-102; PDBTitle: crystal structure of afv1-102, a protein from the acidianus2 filamentous virus 1
3 | d2gykb1 |
|  | 52.7 | 42 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
4 | c7ceiB_ |
|  | 50.7 | 42 | PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
5 | d2jb0b1 |
|  | 47.5 | 50 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
6 | d1r6ta1 |
|  | 41.0 | 17 | Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain
7 | d1tafb_ |
|  | 39.7 | 18 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
8 | c1zauA_ |
|  | 34.9 | 32 | PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis
9 | d1v9pa3 |
|  | 33.4 | 29 | Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase
10 | d1b04a_ |
|  | 30.6 | 40 | Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase
11 | c3thfA_ |
|  | 29.6 | 18 | PDB header:actin-binding protein/protein binding Chain: A: PDB Molecule:protein shroom; PDBTitle: crystal structure of the sd2 domain from drosophila shroom
12 | c3bacA_ |
|  | 27.1 | 39 | PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase
13 | d1dgsa3 |
|  | 25.4 | 29 | Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase
14 | d1ta8a_ |
|  | 24.8 | 42 | Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase
15 | c2l5bA_ |
|  | 22.6 | 55 | PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
16 | c1dgsB_ |
|  | 20.2 | 29 | PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
17 | c3m6wA_ |
|  | 19.2 | 24 | PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
18 | c3v62F_ |
|  | 18.6 | 41 | PDB header:protein binding/dna binding protein Chain: F: PDB Molecule:atp-dependent dna helicase srs2; PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
19 | c1dipA_ |
|  | 18.3 | 19 | PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
20 | c2fgtA_ |
|  | 16.3 | 56 | PDB header:signaling protein Chain: A: PDB Molecule:two-component system yycf/yycg regulatory PDBTitle: crystal structure of yych from bacillus subtilis
21 | d1fyja_ |
| not modelled | 16.1 | 22 | Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain
22 | c1mv4B_ |
| not modelled | 15.9 | 36 | PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin
23 | c3eb8A_ |
| not modelled | 15.8 | 78 | PDB header:hydrolase Chain: A: PDB Molecule:cysteine protease-like vira; PDBTitle: vira
24 | d1lg7a_ |
| not modelled | 15.6 | 20 | Fold:VSV matrix protein Superfamily:VSV matrix protein Family:VSV matrix protein
25 | c3ee1A_ |
| not modelled | 15.3 | 78 | PDB header:hydrolase Chain: A: PDB Molecule:effector protein vira; PDBTitle: novel fold of vira, a type iii secretion system effector protein from2 shigella flexneri
26 | c3m4xA_ |
| not modelled | 13.3 | 24 | PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase
27 | c3tweA_ |
| not modelled | 13.3 | 31 | PDB header:unknown function Chain: A: PDB Molecule:alpha4h; PDBTitle: crystal structure of the de novo designed peptide alpha4h
28 | c2l1qA_ |
| not modelled | 13.0 | 36 | PDB header:antimicrobial protein Chain: A: PDB Molecule:liver-expressed antimicrobial peptide 2; PDBTitle: solution structure of human liver expressed antimicrobial peptide 2
29 | c3tweB_ |
| not modelled | 12.9 | 31 | PDB header:unknown function Chain: B: PDB Molecule:alpha4h; PDBTitle: crystal structure of the de novo designed peptide alpha4h
30 | d1mzga_ |
| not modelled | 12.9 | 19 | Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like
31 | d1csca_ |
| not modelled | 12.3 | 19 | Fold:Citrate synthase Superfamily:Citrate synthase Family:Citrate synthase
32 | c2qrlA_ |
| not modelled | 12.2 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase, nad+, l-lysine- PDBTitle: crystal structure of oxalylglycine-bound saccharopine2 dehydrogenase (l-lys forming) from saccharomyces cerevisiae
33 | d1fx7a3 |
| not modelled | 11.7 | 28 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
34 | d1fzya_ |
| not modelled | 10.6 | 36 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
35 | d2ob5a1 |
| not modelled | 10.6 | 13 | Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like
36 | c2yg8B_ |
| not modelled | 10.4 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans
37 | c1nh1A_ |
| not modelled | 10.2 | 13 | PDB header:avirulence protein Chain: A: PDB Molecule:avirulence b protein; PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae.
38 | d1nh1a_ |
| not modelled | 10.2 | 13 | Fold:Antivirulence factor Superfamily:Antivirulence factor Family:Antivirulence factor
39 | c1zg2A_ |
| not modelled | 10.1 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2.
40 | c2djvA_ |
| not modelled | 9.9 | 27 | PDB header:protein binding Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 methionyl-trna synthetase
41 | d2f76x1 |
| not modelled | 9.3 | 27 | Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Mason-Pfizer monkey virus matrix protein
42 | d1d2da_ |
| not modelled | 9.3 | 24 | Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain
43 | c3bvhE_ |
| not modelled | 9.2 | 21 | PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide
44 | c2hinA_ |
| not modelled | 9.1 | 50 | PDB header:transcription Chain: A: PDB Molecule:repressor protein; PDBTitle: structure of n15 cro at 1.05 a: an ortholog of lambda cro2 with a completely different but equally effective3 dimerization mechanism
45 | c2frxD_ |
| not modelled | 9.0 | 14 | PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli
46 | d1n7va_ |
| not modelled | 8.8 | 29 | Fold:Adsorption protein p2 Superfamily:Adsorption protein p2 Family:Adsorption protein p2
47 | d1v1oa2 |
| not modelled | 8.6 | 36 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain
48 | c3dxeB_ |
| not modelled | 8.5 | 48 | PDB header:protein binding Chain: B: PDB Molecule:amyloid beta a4 protein; PDBTitle: crystal structure of the intracellular domain of human app2 (t668a mutant) in complex with fe65-ptb2
49 | c3fg9B_ |
| not modelled | 8.3 | 45 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1
50 | c2cxiA_ |
| not modelled | 8.3 | 26 | PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of an n-terminal fragment of the phenylalanyl-trna2 synthetase beta-subunit from pyrococcus horikoshii
51 | d1uuja_ |
| not modelled | 8.3 | 29 | Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
52 | d1mwpa_ |
| not modelled | 8.1 | 33 | Fold:SRCR-like Superfamily:A heparin-binding domain Family:A heparin-binding domain
53 | c1nh2C_ |
| not modelled | 8.1 | 33 | PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
54 | d1nh2c_ |
| not modelled | 8.1 | 33 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
55 | c3jslA_ |
| not modelled | 8.0 | 14 | PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus
56 | c2x9oA_ |
| not modelled | 7.8 | 25 | PDB header:oxidoreductase Chain: A: PDB Molecule:15,16- dihydrobiliverdin-ferredoxin oxidoreductase; PDBTitle: structure of 15, 16- dihydrobiliverdin:ferredoxin2 oxidoreductase (peba)
57 | c2g18K_ |
| not modelled | 7.6 | 5 | PDB header:oxidoreductase Chain: K: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of nostoc sp. 7120 phycocyanobilin:ferredoxin2 oxidoreductase (pcya) apoprotein
58 | c3ktmB_ |
| not modelled | 7.6 | 33 | PDB header:cell adhesion, signaling protein Chain: B: PDB Molecule:amyloid beta a4 protein; PDBTitle: structure of the heparin-induced e1-dimer of the amyloid precursor2 protein (app)
59 | c3ec8A_ |
| not modelled | 7.1 | 42 | PDB header:cell adhesion Chain: A: PDB Molecule:putative uncharacterized protein flj10324; PDBTitle: the crystal structure of the ra domain of flj10324 (radil)
60 | c2w2rA_ |
| not modelled | 7.0 | 14 | PDB header:viral protein Chain: A: PDB Molecule:matrix protein; PDBTitle: structure of the vesicular stomatitis virus matrix protein
61 | c2jvhA_ |
| not modelled | 7.0 | 19 | PDB header:immune system Chain: A: PDB Molecule:igg-binding protein sbi; PDBTitle: structure of c3-binding domain 4 of s. aureus protein sbi
62 | c2z5hB_ |
| not modelled | 6.9 | 33 | PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt
63 | d2z8la2 |
| not modelled | 6.6 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain
64 | c2ao9H_ |
| not modelled | 6.6 | 16 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:phage protein; PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
65 | c3d5jB_ |
| not modelled | 6.6 | 26 | PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-2, mitochondrial; PDBTitle: structure of yeast grx2-c30s mutant with glutathionyl mixed disulfide
66 | c3h0gA_ |
| not modelled | 6.6 | 39 | PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe
67 | c3f2rA_ |
| not modelled | 6.3 | 28 | PDB header:transferase Chain: A: PDB Molecule:choline kinase alpha; PDBTitle: crystal structure of human choline kinase alpha in complex2 with hemicholinium-3
68 | d2hrkb1 |
| not modelled | 6.3 | 16 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like
69 | c2wjvE_ |
| not modelled | 6.3 | 40 | PDB header:hydrolase Chain: E: PDB Molecule:regulator of nonsense transcripts 2; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2
70 | c2v1lA_ |
| not modelled | 6.2 | 57 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein
71 | c2wcuB_ |
| not modelled | 6.1 | 15 | PDB header:isomerase Chain: B: PDB Molecule:protein fucu homolog; PDBTitle: crystal structure of mammalian fucu
72 | c3cuxA_ |
| not modelled | 6.0 | 43 | PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
73 | c1ywlA_ |
| not modelled | 6.0 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36
74 | d1eg3a1 |
| not modelled | 6.0 | 38 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
75 | c3lx6B_ |
| not modelled | 6.0 | 20 | PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 2457t
76 | c3iydD_ |
| not modelled | 5.9 | 14 | PDB header:transcription/dna Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
77 | c2q6qB_ |
| not modelled | 5.9 | 67 | PDB header:cell cycle Chain: B: PDB Molecule:spindle pole body component spc42; PDBTitle: crystal structure of spc42p, a critical component of spindle pole body2 in budding yeast
78 | d1axib1 |
| not modelled | 5.8 | 43 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III
79 | d1nhpa3 |
| not modelled | 5.8 | 15 | Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
80 | c2l1uA_ |
| not modelled | 5.8 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein
81 | c2w56B_ |
| not modelled | 5.7 | 43 | PDB header:unknown function Chain: B: PDB Molecule:vc0508; PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island
82 | c2f9jP_ |
| not modelled | 5.7 | 36 | PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
83 | c2k58B_ |
| not modelled | 5.7 | 26 | PDB header:transport protein Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2; PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
84 | d1eita_ |
| not modelled | 5.7 | 100 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins
85 | d2qdyb1 |
| not modelled | 5.7 | 25 | Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain
86 | c1z9vA_ |
| not modelled | 5.5 | 30 | PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein mth0776; PDBTitle: solution structure of mth0776 from methanobacterium2 thermoautotrophicum (strain h)
87 | c3ax1A_ |
| not modelled | 5.5 | 9 | PDB header:protein binding Chain: A: PDB Molecule:serrate rna effector molecule; PDBTitle: molecular insights into mirna processing by arabidopsis serrate
88 | d1yh2a1 |
| not modelled | 5.5 | 36 | Fold:UBC-like Superfamily:UBC-like Family:UBC-related
89 | c1x4qA_ |
| not modelled | 5.4 | 43 | PDB header:rna binding protein Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3; PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3)
90 | d1qrjb1 |
| not modelled | 5.3 | 16 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain
91 | c1v1oB_ |
| not modelled | 5.3 | 36 | PDB header:virulence factor Chain: B: PDB Molecule:exotoxin 1; PDBTitle: staphylococcal superantigen-like protein 7
92 | c2k72A_ |
| not modelled | 5.3 | 33 | PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-23; PDBTitle: solution nmr structure of toxin-like potassium channel2 blocking domain in mmp23
93 | d2etda1 |
| not modelled | 5.3 | 14 | Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like
94 | d2tssa2 |
| not modelled | 5.3 | 36 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain
95 | c4dzoA_ |
| not modelled | 5.3 | 29 | PDB header:cell cycle Chain: A: PDB Molecule:mitotic spindle assembly checkpoint protein mad1; PDBTitle: structure of human mad1 c-terminal domain reveals its involvement in2 kinetochore targeting
96 | d2eiaa1 |
| not modelled | 5.2 | 16 | Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain
97 | c2w4rB_ |
| not modelled | 5.1 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58; PDBTitle: crystal structure of the regulatory domain of human lgp2
98 | c2b9sA_ |
| not modelled | 5.1 | 8 | PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex
99 | c3l4nA_ |
| not modelled | 5.1 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-6; PDBTitle: crystal structure of yeast monothiol glutaredoxin grx6