Phyre 2 alignment of A0AUZ9 with c1dgsB_

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Job Description | A0AUZ9
Confidence | 20.20% | Date | Sat Jun 16 10:19:00 BST 2012
Rank | 16 | Aligned Residues | 31
% Identity | 29% | Template | c1dgsB_
PDB info | PDB header:ligase | Chain: B: PDB Molecule:dna ligase; | PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 762 | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . |  |  |  |  |  | . | . | . | 800
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |
Query Sequence |  | R | R | L | R | S | E | S | S | Y | D | I | D | N | I | V | I | P | M | S | L | V | A | P | A | K | L | E | K | L | Q | Y | K | E | I | L | . | . | . | . | . | T | P | S | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | A | Q | R | H | A | L | P | F | E | A | D | G | V | V | L | . | . | . | . | . | . | . | . | K | L | D | D | L | T | L | W | G | E | L | G | Y | T | A | R | A | P | R | F
Template Known Secondary structure |  |  |  | T | G | G | G | S | S | S |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  | S | B | T | T |  |  |  |  | S |  | B |  | S | S | S | B | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2272 | . | . | . | . | . | . | . | 2280 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . | 2290 | . | . | . | . | . | . | . | . | . | 2300 | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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