Job Description A1A4F0 Confidence 4.54% Date Tue Apr 3 15:02:45 BST 2012 Rank 20 Aligned Residues 87 % Identity 15% Template c3gq2B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain Resolution 2.18 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.											.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																				.	.	.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	F	V	A	Y	R	N	G	R	V	D	E	A	V	S	L	G	.	.	.	F	L	D	C	W	I	G	G	D	L	T	N	F	K	G	C	Y	L	T	N	Q	L	P	I	Q	I	F	T	A	I	F	.	.	.	.	.	.	.	.	.	.	D	M	N	T	D	V	I	I	L	S	Q	F	M	Y	Y	R	L	K
Query Conservation																				.	.	.																																.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.													.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		Q	Q	C	T	N	I	L	S	Q	G	S	K	I	Q	T	R	V	G	L	L	M	L	L	C	T	W	L	S	N	C	P	I	A	.	V	T	H	F	L	H	N	S	A	N	V	P	F	L	T	G	Q	I	A	E	N	L	G	E	E	E	Q	L	V	Q	G	L	C	A	L	L	L	G	I	S	I	Y	F	N	D	N
Template Known Secondary structure								T	T	T	T																		T	T					.							S	T	T											S				G	G	G																	T			S
Template Predicted Secondary structure																																			.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		96		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		N	.	Q	K	K	K	M	I	F	Q	P	Q	L	F	K	D	S	I	T	R	E	K
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		S	L	E	T	Y	M	K	E	K	L	K	Q	L	I	E	K	R	I	G	K	E	N
Template Known Secondary structure			S	S	S	S		S											T
Template Predicted Secondary structure
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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