Job Description A0PJK1 Confidence 98.43% Date Tue Apr 3 14:59:03 BST 2012 Rank 6 Aligned Residues 457 % Identity 11% Template c4djiA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter; PDBTitle: structure of glutamate-gaba antiporter gadc Resolution 3.19 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		R	D	M	T	W	W	P	I	G	A	S	L	F	A	S	S	E	G	S	G	L	F	I	G	L	A	G	S	G	A	A	G	G	L	A	V	A	G	F	E	W	N	A	T	Y	V	L	L	A	L	A	W	V	F	V	P	I	Y	I	S	S	E	I	V	T	.	.	L	P	E	Y	I	Q	K	R	Y	G	G	Q	R
Query Conservation																																																																			.	.
Alig confidence																				.	.	.																																													.	.											.	.
Template Conservation																				.	.	.																																																									.	.
Template Sequence		K	Q	L	T	L	L	G	F	F	A	I	T	A	S	M	V	M	A	.	.	.	V	Y	E	Y	P	T	F	A	T	S	G	F	S	L	V	F	F	L	L	L	G	G	I	L	W	F	I	P	V	G	L	C	A	A	E	M	A	T	V	D	G	W	E	E	G	G	V	F	A	W	V	S	N	T	L	G	.	.	P
Template Known Secondary structure														G	G	G	S			.	.	.		T	T	S	G	G	G	S	T	T	G	G	G												T													S	B	T	T	T	S	S		S	S	S							T		.	.
Template Predicted Secondary structure																				.	.	.																																																									.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																					.	.
Query SS confidence																																					.	.	.	.	.																					.	.
Query Sequence		I	R	M	Y	L	S	V	L	S	L	L	L	S	V	F	T	K	I	S	L	D	L	Y	A	G	A	L	F	V	H	I	C	L	G	W	.	.	.	.	.	N	F	Y	L	S	T	I	L	T	L	G	I	T	A	L	Y	T	I	A	G	.	.	G	L	A	A	V	I	Y	T	D	A	L	Q	T	L	I	M	V	V
Query Conservation																																					.	.	.	.	.																					.	.
Alig confidence																																					.	.	.	.	.																					.	.
Template Conservation
Template Sequence		R	W	G	F	A	A	I	S	F	G	Y	L	Q	I	A	I	G	F	I	P	M	L	Y	F	V	L	G	A	L	S	Y	I	L	K	W	P	A	L	N	E	D	P	I	T	K	T	I	A	A	L	I	I	L	W	A	L	A	L	T	Q	F	G	G	T	K	Y	T	A	R	I	A	K	V	G	F	F	A	G	I	L
Template Known Secondary structure									T	T	T	T																						T	T		T	T	T	T	S																						S		T	T	S												T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	I	L	T	I	K	A	F	D	Q	I	G	G	Y	G	Q	L	E	A	A	Y	A	Q	A	I	P	S	R	T	I	A	N	T	T	C	H	L	P	R	T	D	A	M	H	M	F	R	D	P	H	T	G	D	L	P	W	T	G	M	T	F	G	L	T	I	M	A	T	W	Y	W	C	T	D	Q	V	I	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	A	F	I	L	I	A	L	A	A	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	S	G	A	I	E	M	D	S	K	T	F	F	P	D	F	S	K	V	G	T	L	V	V	F	V	A	F	I	L	S	Y	M	G	V	E	A	S	A	T
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S							S	S			S			T	T	S	T	T	S	G	G	G									T	T	T	T	T	T	S	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.																											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		Q	R	S	L	S	A	R	D	L	N	H	A	K	A	G	S	I	L	A	S	Y	L	K	M	L	P	M	G	L	I	I	M	P	G	M	I	S	R	A	L	F	P	D	D	V	G	C	V	V	P	S	E	C	L	R	A	C	G	A	E	V	G	C	S	N	I	A	Y	P	K	L	V	M	E	L	M	P	.	.	I
Query Conservation																																																																															.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	N	E	M	S	N	P	G	R	D	Y	P	L	A	M	L	L	L	M	V	A	A	I	C	L	S	S	V	G	G	L	S	I	A	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	N	E	I	N	L	S	A	G	V	M	Q	T	F	T	V	L	M	S	H	V	A	P	E	I	E
Template Known Secondary structure		G	G	T	T	S	S																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G			S	S	S															G	G	G	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.										.
Query SS confidence																													.	.	.										.
Query Sequence		G	L	R	G	L	M	I	A	V	M	L	A	A	L	M	S	S	L	T	S	I	F	N	S	S	S	T	.	.	.	L	F	T	M	D	I	W	R	R	.	L	R	P	R	S	G	E	R	E	L	L	L	V	G	R	L	V	I	V	A	L	I	G	V	S	V	A	W	I	P	V	L	Q	D	S	N	S	G	Q	L
Query Conservation																													.	.	.										.
Alig confidence																													.	.	.										.
Template Conservation
Template Sequence		W	T	V	R	V	I	S	A	L	L	L	L	G	V	L	A	E	I	A	S	W	I	V	G	P	S	R	G	M	Y	V	T	A	Q	K	N	L	L	P	A	A	F	A	K	M	N	K	N	G	V	P	V	T	L	V	I	S	Q	L	V	I	T	S	I	A	L	I	I	L	T	N	T	G	G	G	N	N	M	S	F
Template Known Secondary structure		T																					T	T						T						T	S		S		S	S	S					S	S																			T	T	T	T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.													.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	Y	M	Q	S	V	T	S	S	L	A	P	P	V	T	A	V	F	V	L	G	V	F	W	R	R	A	N	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	G	A	F	W	G	L	I	A	G	L	V	V	G	A	T	R	L	V	L	E	F	L	N	P	A	P	P	C	G	E	P	D	T	R	P	A	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		L	I	A	L	A	L	T	V	V	I	Y	L	C	A	Y	F	M	L	F	I	G	Y	I	V	L	V	L	K	H	P	D	L	K	R	T	F	N	I	P	G	G	K	G	V	K	L	V	V	A	I	V	G	L	L	T	S	I	M	A	F	I	V	S	F	L	P	P	D	N	I	Q	G	D	S	.	.	.	.	.	.
Template Known Secondary structure																																S	S		B	S	S			S	S																							T	T				S		S	S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	I	H	Y	L	H	F	A	V	A	L	F	A	L	S	G	A	V	V	V	A	G	S	L	L	T	P	P	P	Q	S	V	Q	I	E	N	L	T	W	W	T	L	A	Q	D	V	P	L	G	T	K	A	G	D	G	Q
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	T	D	M	Y	V	E	L	L	V	V	S	F	L	V	V	L	A	L	P	F	I	L	Y	A	V	H	D	A	N	T	G	V	T	L	E	P	I	N	S	Q	N	A	P	K	G	H	F	F	L	H	P	R	A	R	S	P
Template Known Secondary structure		.	.		S	S											T	T	T	T																						S	S	S			T	T	S	T	T	S		T	T	T			S
Template Predicted Secondary structure		.	.
Template SS confidence
				442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.