Job Description A0PJK1 Confidence 1.73% Date Tue Apr 3 14:59:03 BST 2012 Rank 72 Aligned Residues 123 % Identity 8% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	G	R	L	V	I	V	A	L	I	G	V	S	V	A	W	I	P	V	L	Q	D	S	N	S	G	Q	L	F	I	Y	M	Q	S	V	T	S	S	L	A	P	P	V	T	A	V	F	V	L	G	V	F	W	R	R	A	N	E	Q	G	A	F	W	G	L	I	A	G	L	V	V	G	A	T	R	L	V	L
Query Conservation
Alig confidence																																									.																	.
Template Conservation																																									.																	.
Template Sequence		I	L	V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	.	F	N	S	V	L	C	G	I	A	M	G	G	I	F	F	Y	.	L	N	I	R	T	F	L	Y	A	L	G	C	M	V	L	G	A	I	A	T	G	A	F
Template Known Secondary structure																											T	T								T	T	T	T	T	.											T	T	T	S	B		.		S
Template Predicted Secondary structure																																									.																	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.							.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		E	F	L	N	P	A	P	P	C	G	E	P	D	T	R	P	A	V	L	G	S	I	H	Y	L	H	F	A	V	A	L	F	A	L	S	G	A	V	V	V	A	G	S	L	L	.	.	.	.	.	.	T	P	P	P	Q	S	V	Q	I	E	N	L
Query Conservation																																															.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	L	.	.	.	.	.	.	.	.	.	.	.	.	L	S	P	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W	L	F	L	F	A	G	S	M	F	R	N	I	A	Q	V	P	T	E	K	A	G	T	P	E	D	N	L	R	S	L
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	T				T	T														G	G	G		T	T	S		B			T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.													.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions