Job Description A0PJK1 Confidence 95.15% Date Tue Apr 3 14:59:03 BST 2012 Rank 8 Aligned Residues 345 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																								.	.														.	.	.	.	.	.	.
Query SS confidence																																								.	.														.	.	.	.	.	.	.
Query Sequence		G	S	G	A	A	G	G	L	A	V	A	G	F	E	W	N	A	T	Y	V	L	L	A	L	A	W	V	F	V	P	I	Y	I	S	S	E	I	V	.	.	T	L	P	E	Y	I	Q	K	R	Y	G	G	Q	.	.	.	.	.	.	.	R	I	R	M	Y	L	S	V	L	S	L	L	L	S	V	F	T	K	I	S
Query Conservation																																								.	.														.	.	.	.	.	.	.
Alig confidence																																								.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G
Template Known Secondary structure														T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																			.	.																		.	.	.	.	.	.
Query SS confidence																			.	.																		.	.	.	.	.	.
Query Sequence		L	D	L	Y	A	G	A	L	F	V	H	I	C	L	G	W	N	.	.	F	Y	L	S	T	I	L	T	L	G	I	T	A	L	Y	T	I	.	.	.	.	.	.	A	G	G	L	A	A	V	I	Y	T	D	A	L	Q	T	L	I	M	V	V	G	A	V	I	L	T	I	K	A	F	D	Q	I	G	G	Y	G	Q
Query Conservation																			.	.																		.	.	.	.	.	.
Alig confidence																			.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S
Template Known Secondary structure												T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	A	A	Y	A	Q	A	I	P	S	R	T	I	A	N	T	T	C	H	L	P	R	T	D	A	M	H	M	F	R	D	P	H	T	G	D	L	P	W	T	G	M	T	F	G	L	T	I	M	A	T	W	Y	W	C	T	D	Q	V	I	V	Q	R	S	L	S	A	R	D	L	N	H	A	K	A	G	S	I	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	.	.	.	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L
Template Known Secondary structure														T					S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	T											T					.	.	.							T		S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.														.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		A	S	Y	L	K	M	L	P	M	G	L	I	I	M	P	G	M	I	S	R	A	L	F	P	D	D	V	G	C	V	V	P	S	E	C	L	R	A	C	G	A	E	V	G	C	S	N	I	A	Y	P	K	L	V	M	E	L	.	M	P	I	G	L	R	G	L	M	I	A	V	M	L	A	A	L	M	S	S	L	T
Query Conservation																																																											.
Alig confidence													.																							.	.	.	.	.	.	.	.																.
Template Conservation													.																							.	.	.	.	.	.	.	.
Template Sequence		G	L	T	A	S	T	W	I	L	W	T	.	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	.	.	.	.	.	.	.	.	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N
Template Known Secondary structure													.												T	T	S								G	.	.	.	.	.	.	.	.	G	G												T	S	S	S	T	T
Template Predicted Secondary structure													.																							.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.									.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	F	N	S	S	S	T	L	F	T	M	D	I	W	R	R	L	R	P	R	S	G	E	R	E	L	L	L	V	G	R	L	V	I	V	A	L	I	G	V	S	V	A	W	I	P	V	L	Q	D	S	N	S	G	Q	L	F	I	Y	M	Q	S	V	T	S	S	L	A	P	P	V	T	A	V	F	V	L	G	V
Query Conservation
Alig confidence															.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		A	C	S	Y	T	L	A	M	S	T	C	R	E	.	.	.	.	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	.	.	.	.	.	.	.	.	.	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T
Template Known Secondary structure										T	T	S		S	.	.	.	.	S	S	S	S		S	S		S	T	T																			.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure															.	.	.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.					.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.										.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		463
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		492

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions