Job Description A0PJK1 Confidence 2.24% Date Tue Apr 3 14:59:03 BST 2012 Rank 49 Aligned Residues 143 % Identity 14% Template c2bg9B_ PDB info PDB header:ion channel/receptor Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. Resolution 4.00 Å

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		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	T	S	S	L	A	P	P	V	T	A	V	F	V	L	G	V	F	W	R	R	A	N	E	Q	G	A	F	W	G	L	I	A	G	L	V	V	G	A	T	R	L	V	L	E	F	L	N	P	A	P	P	C	G	E	P	D	T	R	P	A	V	L	G	S	I	H	Y	L	H	F	A	V	A	L	F	A	L	S
Query Conservation
Alig confidence																											.																																						.	.	.	.	.
Template Conservation																											.																																						.	.	.	.	.
Template Sequence		I	V	Y	T	I	V	P	C	I	L	I	S	I	L	A	I	L	V	F	Y	L	P	P	D	A	.	G	E	K	M	S	L	S	I	S	A	L	L	A	L	T	V	F	L	L	L	L	A	D	K	V	P	E	T	S	L	S	V	P	I	I	I	S	.	.	.	.	.	Y	L	M	F	I	M	I	L	V	A	F	S
Template Known Secondary structure																						S	T	T	T		.	T	T																												T	T	S				S		.	.	.	.	.
Template Predicted Secondary structure																											.																																						.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure																											.																																				.
Query SS confidence																											.																																				.
Query Sequence		G	A	V	V	V	A	G	S	L	L	T	P	P	P	Q	S	V	Q	I	E	N	L	T	W	W	.	T	L	A	Q	D	V	P	L	G	T	K	A	G	D	G	Q	T	P	Q	K	H	A	F	W	A	R	V	C	G	F	N	A	I	L	L	.	M	C	V	N	I	F	F	Y	A	Y	F
Query Conservation																											.																																				.
Alig confidence																			.	.							.																																				.
Template Conservation																			.	.
Template Sequence		V	I	L	S	V	V	V	L	N	L	H	H	R	S	P	N	T	.	.	H	E	A	V	E	A	I	K	Y	I	A	E	Q	L	E	S	A	S	E	F	D	D	L	K	K	D	W	Q	Y	V	A	M	V	A	D	R	L	F	L	Y	I	F	I	T	M	C	S	I	G	T	F	S	I	F
Template Known Secondary structure														T		T	T	T	.	.																													S		S
Template Predicted Secondary structure																			.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions