Return to main results Retrieve Phyre Job Id

Job DescriptionQ2TBF2
Confidence100.00%DateThu Apr 26 09:35:20 BST 2012
Rank19Aligned Residues212
% Identity18%Templatec2ovfA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:stal; PDBTitle: crystal structure of stal-pap complex
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   343......350.........360.........370.........380.. .......390.........400.........410..
Predicted Secondary structure 






















.....
























.....
Query SS confidence 







































. . . . .





























. . . . .
Query Sequence  LIALASFPGAGNTWARHLIELATGFYTGSYYFDGSLYNKG. . . . . FKGERDHWRSGRTICIKTHESGQKEIEAFD. . . . .
Query Conservation 

 












 

   

  


 
 
  
    .....   
           



           .....
Alig confidence 







































.....





























.....
Template Conservation 
 

 
 







  

                                           

                
Template Sequence  MCWIASYPKAGGHWLRCMLTSYVTGEPVETWPGIQAGVPHLEGLLRDGEAPSADPDEQVLLATHFTADRPVLRFYRESTA
Template Known Secondary structure 
TTSSSS


STS
BTT



SS
SS

S
TT
GGGGGGTTT
Template Predicted Secondary structure 




































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   413......420.........430.........440.........450.. .......460.........470. ........480
Predicted Secondary structure 
















......
......


Query SS confidence 







































. . . . . .


















. . . . . .








Query Sequence  AAILLIRNPYKALMAEFNRKYGGHIGFAAHAHWKGKEWPE. . . . . . FVRNYAPWWATHTLDWLKF. . . . . . GKKVLVVHF
Query Conservation   







 

 

                      
  ......

      

 
   

  ......   





Alig confidence 







































......


















......








Template Conservation 
 
 
 


 

  
                                              
            

 


Template Sequence  KVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKIAETFIADEGFSSVRIWAGEGSWPENIRSWTDSVHESFPNAAVLAVRY
Template Known Secondary structure 




TT
TSSTT
TTS
S


TTTGGGT
TT
Template Predicted Secondary structure 


























Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   481........490.........500.........510.. .......520.........530.........540.... .....
Predicted Secondary structure 





........
















...
Query SS confidence 































. . . . . . . .































. . .




Query Sequence  EDLKQDLFVQLGRMVSLLGVAVREDRLLCVES. . . . . . . . QKDGNFKRSGLRKLEYDPYTADMQKTISAYIK. . . MVDAA
Query Conservation 


  
    



  

 
   
 

 
 
 ........ 
 
 
 


  
      



   

  
 ... 
   
Alig confidence 































........































...




Template Conservation 


  

   
  
  



         
   

  
                              
           
Template Sequence  EDLRKDPEGELWKVVDFLELGGRDGVADAVANCTLERMREMEERSKLLGLETTKSLKFMGDDIEKAYADLLHGETDFAHY
Template Known Secondary structure 
T


SS
T





S
TT
TTTSSS
Template Predicted Secondary structure 

























Template SS confidence 















































































   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   550....
Predicted Secondary structure 

Query SS confidence 




Query Sequence  LKGRN
Query Conservation 
    
Alig confidence 




Template Conservation      
Template Sequence  ARLYG
Template Known Secondary structure  TT
Template Predicted Secondary structure 
Template SS confidence 




   263....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions