Job Description P52735 Confidence 99.53% Date Wed Jun 6 09:50:28 BST 2012 Rank 239 Aligned Residues 52 % Identity 29% Template c3rebD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860			.	.	.	.	.	.	.	.	.	870	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		T	A	V	A	R	Y	N	F	A	A	R	D	M	R	E	L	S	L	R	E	G	D	V	V	R	I	Y	S	R	I	G	G	D	Q	G	W	W	K	G	E	T	.	.	N	G	R	I	G	W	F	P	S	T	Y	V	E	E
Query Conservation																																											.	.
Alig confidence																															.	.	.										.	.
Template Conservation																															.	.	.
Template Sequence		I	V	V	A	L	Y	D	Y	V	S	W	S	P	D	D	L	S	F	Q	K	G	D	Q	M	V	V	L	E	E	.	.	.	S	G	E	W	W	K	A	R	S	L	A	T	R	K	E	G	Y	I	P	S	N	Y	V	A	R
Template Known Secondary structure						S	S		B			S	S	T	T	B			B		T	T									.	.	.	S	S	S							T	T	T								G	G	G
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions