Job Description P52735 Confidence 100.00% Date Wed Jun 6 09:50:28 BST 2012 Rank 16 Aligned Residues 289 % Identity 16% Template c3mpxA_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:fyve, rhogef and ph domain-containing protein 5; PDBTitle: crystal structure of the dh and ph-1 domains of human fgd5 Resolution 2.80 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																																							.
Query SS confidence																																		.	.	.	.	.	.	.	.	.																																							.
Query Sequence		D	K	R	N	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	S	P	L	.	.	.	.	.	.	.	.	.	R	L	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I	K	V	H	H	S	F	L	R	A	I	D	V	S	V	M	V	G	G	.
Query Conservation																																		.	.	.	.	.	.	.	.	.																																							.
Alig confidence																																		.	.	.	.	.	.	.	.	.																																							.
Template Conservation
Template Sequence		S	R	A	L	V	I	A	Q	E	L	L	S	S	E	K	A	Y	V	E	X	L	Q	H	L	N	L	D	F	H	G	A	V	X	R	A	L	D	D	X	D	H	E	D	T	L	A	R	E	E	L	R	Q	G	L	S	E	L	P	A	I	H	D	L	H	Q	G	I	L	E	E	L	E	E	R	L	S	N	W	E	S
Template Known Secondary structure																													T												T	T																																				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970
			267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	T	L	A	K	V	F	L	D	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	N	T	L	N	Q	L	L	A	S	R	E	D	F	R	Q	K	V	E	E	C	T	L	K	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	K	E
Query Conservation		.
Alig confidence		.																																																		.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		Q	Q	K	V	A	D	V	F	L	A	R	E	Q	G	F	D	H	H	A	T	H	I	L	Q	F	D	R	Y	L	G	L	L	S	E	N	C	L	H	S	P	R	L	A	A	A	V	R	E	F	E	.	.	.	.	.	.	Q	S	T	A	K	H	R	L	L	R	V	V	Q	R	L	F	Q	Y	Q	V	L	L	T	D
Template Known Secondary structure						T					T	T	T	T	T																							T	T													.	.	.	.	.	.	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		973	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.							.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.
		346	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	L	S	H	S	A	.	E	R	P	E	R	Q	Q	L	K	E	A	L	E	A	M	Q	D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	R	K	I	S	E	F	Q	S	S	I	E	N	L	Q	V	K	L	E	E	F	G	R	P	K	I	D	G	E	L	K	V	R	S	I	V	N	H	T	K	Q	D
Query Conservation								.
Alig confidence								.																																																																		.	.
Template Conservation																																																																										.	.
Template Sequence		Y	L	N	N	L	C	P	D	S	A	E	Y	D	N	T	Q	G	A	L	S	L	I	S	K	V	T	D	R	A	N	D	S	X	E	Q	G	E	N	L	Q	K	L	V	H	I	E	H	S	V	R	G	Q	G	D	L	L	Q	P	G	R	E	F	L	K	E	G	T	L	X	K	V	T	.	.	G	K	N	R	R	P
Template Known Secondary structure				T	T	S		T	T	S																									T	T																T							T	T														.	.	T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		1053	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.			.	.	.	.	.	1130
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		R	Y	L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	.	Y	S	Y	E	L	K	E	I	I	E	L	L	F	H	K	M	T	D	D	P	M	N	N	K	D	V	K	K	S	H	G	K	M	W	S	Y	G	F	Y	L	I	H	L	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W
Query Conservation																			.
Alig confidence																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	L	F	L	X	N	D	V	L	L	Y	T	Y	P	Q	K	D	G	K	Y	R	L	K	N	T	L	A	V	S	R	P	V	X	E	K	V	P	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	I	E	T	S	E	S	C	L	X	L	S	A	S	S	C	A	E	R	D	E	W
Template Known Secondary structure								S	S									T	T	S																T	T	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S								S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1131	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170																		.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.
		504	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	Q	F	E	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	C	L	S	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1199	1200	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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