Job Description P52735 Confidence 100.00% Date Wed Jun 6 09:50:28 BST 2012 Rank 14 Aligned Residues 292 % Identity 21% Template c2rgnB_ PDB info PDB header:signaling protein complex Chain: B: PDB Molecule:rhoa/rac/cdc42 exchange factor; PDBTitle: crystal structure of p63rhogef complex with galpha-q and rhoa Resolution 3.50 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		M	T	E	D	D	K	R	N	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	S	P	L	R	L	.	.	.	.	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I	K	V	H	H	S	F	L	R	A	I	D	V	S	V	M	V	G	G	S	T
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.
Template Conservation
Template Sequence		K	K	A	L	E	R	S	M	Y	V	L	S	E	L	V	E	T	E	K	M	Y	V	D	D	L	G	Q	I	V	E	G	Y	M	A	T	M	A	A	Q	G	V	P	E	S	L	R	G	R	D	R	I	V	F	G	N	I	Q	Q	I	Y	E	W	H	R	D	Y	F	L	Q	E	L	Q	R	C	L	K	D	P	D	W
Template Known Secondary structure		S																													T	T												S	S	S	G	G	G						T	T											T										S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	V	F	L	D	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	N	T	L	N	Q	L	L	A	S	R	E	D	F	R	Q	K	V	E	E	C	T	L	K	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	K	E	L	L	S
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		L	A	Q	L	F	I	K	H	E	R	R	L	H	M	Y	V	V	Y	C	Q	N	K	P	K	S	E	H	V	V	S	E	F	G	D	.	.	.	.	.	.	.	S	Y	F	E	E	L	R	Q	Q	L	G	H	R	L	Q	L	N	D	L	L	I	K	P	V	Q	R	I	M	K	Y	Q	L	L	L	K	D	F	L	K
Template Known Secondary structure									T	T	T	T	T									T	S								T	T	T	S		.	.	.	.	.	.	.													S	S						T	T							T	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		349	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		H	S	A	.	E	R	P	E	R	Q	Q	L	K	E	A	L	E	A	M	Q	D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	R	K	I	S	E	F	Q	S	S	I	E	N	L	Q	V	K	L	E	E	F	G	R	P	K	I	D	G	E	L	K	V	R	S	I	V	N	H	T	K	Q	D	R	Y	L
Query Conservation					.
Alig confidence					.																												.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Sequence		Y	Y	N	R	A	G	M	D	T	A	D	L	E	Q	A	V	E	V	M	C	F	V	P	K	R	C	N	D	M	M	T	.	.	.	.	.	.	.	.	.	.	.	L	G	R	L	R	G	F	E	G	K	L	T	A	Q	G	K	L	L	G	Q	D	T	F	W	V	T	E	.	.	P	S	R	G	R	E	R	R	V
Template Known Secondary structure			T	S	S	S		S																									.	.	.	.	.	.	.	.	.	.	.	G	G	G		B	S			S		S	T	T	S														.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.												.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	S	Y	E	L	K	E	I	I	E	L	L	F	H	K	M	T	D	D	P	M	N	N	K	D	V	K	K	S	H	G	K	M	W	S	Y	G	F	Y	L	I	H	L	Q	G	K	.	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q
Query Conservation																																																														.
Alig confidence																																							.	.	.	.	.	.	.	.	.															.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		F	L	F	E	Q	I	I	I	F	S	E	A	L	G	P	G	Y	V	Y	K	N	S	I	K	V	S	C	L	G	L	E	G	N	L	Q	G	D	.	.	.	.	.	.	.	.	.	P	C	R	F	A	L	T	S	R	G	P	E	G	G	I	Q	R	Y	V	L	Q	A	A	D	P	A	I	S	Q	A	W	I	K	H
Template Known Secondary structure					S	S																				G	G	G						S	G	G	G		.	.	.	.	.	.	.	.	.	T	T									S	S	S										S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.										.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		507	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	M	A	M	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	Q	I	L	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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