Job Description P52735 Confidence 98.99% Date Wed Jun 6 09:50:28 BST 2012 Rank 269 Aligned Residues 320 % Identity 10% Template c2q13A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:dcc-interacting protein 13 alpha; PDBTitle: crystal structure of bar-ph domain of appl1 Resolution 2.05 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.										.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.											.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.											.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	P	M	I	R	Y	M	Q	K	M	G	M	T	E	D	D	K	R	N	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	.	.	.	Y	M	S	P	L	R	L	V	L	S	.	.	.	.	.	.	.	.	.	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I
Query Conservation																																													.	.	.											.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	P	Q	T	R	S	L	L	G	V	F	E	E	D	A	T	A	I	S	N	Y	M	N	Q	L	Y	Q	A	M	H	R	I	Y	D	A	Q	N	E	L	S	A	A	T	H	L	T	S	K	L	L	K	E	Y	E	K	Q	R	F	P	L	D	E	V	M	S	S	T	L	Q	Q	F	S	K	V	I	D	E	L	S
Template Known Secondary structure																																																						T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																										.																																.	.	.
Query SS confidence																										.																																.	.	.
Query Sequence		K	V	H	H	S	F	L	R	A	I	D	V	S	V	M	V	G	G	S	T	L	A	K	V	.	F	L	D	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	N	T	L	N	Q	L	L	A	S	.	.	.	R	E	D	F	R	Q	K	V	E	E	C	T	L	K	V	Q	D	G	K	F	K
Query Conservation																										.																																.	.	.
Alig confidence																										.																																.	.	.
Template Conservation
Template Sequence		S	C	H	A	V	L	S	T	Q	L	A	D	A	M	M	F	P	I	T	Q	F	K	E	R	D	L	K	E	I	L	T	L	K	E	V	F	Q	I	A	S	N	D	H	D	A	A	I	N	R	Y	S	R	L	S	K	K	R	E	N	D	K	V	K	Y	E	V	T	E	D	V	Y	T	S	R	K	K	Q	H	Q	T
Template Known Secondary structure															T										T																												T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.														.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	.	L	L	L	K	E	L	L	S	H	S	A	E	R	P	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	L	K	E	A	L	E	A	M	Q	D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	R	K	I	S	E	F	Q
Query Conservation																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																																																												.	.
Template Sequence		M	M	H	Y	F	C	A	L	N	T	L	Q	Y	K	K	K	I	A	L	L	E	P	L	L	G	Y	M	Q	A	Q	I	S	F	F	K	M	G	S	E	N	L	N	E	Q	L	E	E	F	L	A	N	I	G	T	S	V	Q	N	V	R	R	E	M	D	S	D	I	E	T	M	Q	Q	T	I	.	.	E	D	L	E
Template Known Secondary structure																																										S																																		.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		S	S	I	E	N	L	Q	V	K	L	E	E	F	G	R	P	K	I	D	G	E	L	K	V	R	S	I	.	.	V	N	H	T	K	Q	D	R	Y	L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	S	Y	E	L	K	E	I	I	E	L	L	F	H	K	M	T	D	D	P	M	N	N	K	D	V	K
Query Conservation																													.	.
Alig confidence																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	S	D	P	L	Y	V	P	D	P	D	P	T	K	F	P	V	N	R	N	L	T	R	K	A	G	Y	L	N	A	R	T	W	D	R	Q	F	Y	F	T	Q	G	G	N	L	M	S	Q	A	R	G	D	V	A	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	A	M	D	I	D	N	C	S	V	M
Template Known Secondary structure					G	G	G	S	S	S	S			T	T	T	S							S																				T	T							S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310													.	.	.	.	.	.	.	.	.	320	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	H	G	K	M	W	S	Y	G	F	Y	L	I	H	L	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q	F	E	M	A	M	S	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	D	C	E	D	R	R	Y	C	F	Q	I	T	S	F	D	G	K	K	S	S	I	L	Q	A	E	S	K	K	D	H	E	E	W	I	C	T	I	N	N	I	S	K	Q	I
Template Known Secondary structure						T	T		S	S							T	T	S		B							S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions