Job Description P52735 Confidence 100.00% Date Wed Jun 6 09:50:28 BST 2012 Rank 15 Aligned Residues 319 % Identity 19% Template c1foeA_ PDB info PDB header:signaling protein, immune system/signali Chain: A: PDB Molecule:t-lymphoma invasion and metastasis inducing PDBTitle: crystal structure of rac1 in complex with the guanine2 nucleotide exchange region of tiam1 Resolution 2.80 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.																																						.	.	.
Query SS confidence																																								.	.																																						.	.	.
Query Sequence		M	T	E	D	D	K	R	N	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	S	P	L	R	L	.	.	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I	K	V	H	H	S	F	L	R	A	I	D	V	S	V	M	V	G	G	S	.	.	.
Query Conservation																																								.	.																																						.	.	.
Alig confidence																																								.	.																																						.	.	.
Template Conservation
Template Sequence		L	S	D	A	D	K	L	R	K	V	I	C	E	L	L	E	T	E	R	T	Y	V	K	D	L	N	C	L	X	E	R	Y	L	K	P	L	Q	K	E	T	F	L	T	Q	D	E	L	D	V	L	F	G	N	L	T	E	X	V	E	F	Q	V	E	F	L	K	T	L	E	D	G	V	R	L	V	P	D	L	E	K
Template Known Secondary structure																																	T						T	S	S	S	S										S	S																				T	T	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		1035	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.
														268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	K	V	F	L	D	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	N	T	L	N	Q	L	L	A	S	R	E	D	F	R	Q	K	V	E	E	C	T	L	K	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																		.																		.
Template Conservation																																															.																		.
Template Sequence		L	E	K	V	D	Q	F	K	K	V	L	F	S	L	G	G	S	F	L	Y	Y	A	D	R	F	K	L	Y	S	A	F	C	A	S	H	T	K	V	P	K	V	L	V	K	A	.	K	T	D	T	A	F	K	A	F	L	D	A	Q	N	P	R	Q	.	Q	H	S	S	T	L	E	S	Y	L	I	K	P	I	Q	R
Template Known Secondary structure				S	G	G	G	G															T	T	G	G	G	G								T	T	T						T	T	T	.	T	T													T	T		.		G	G	G	S					T	T
Template Predicted Secondary structure																																															.																		.
Template SS confidence
		1115	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.		.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.				.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																		.																																															.	.	.
Query SS confidence																		.																																															.	.	.
Query Sequence		V	L	K	Y	H	L	L	L	K	E	L	L	S	H	S	A	.	E	R	P	E	R	Q	Q	L	K	E	A	L	E	A	M	Q	D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	R	K	I	S	E	F	Q	S	S	I	E	N	L	Q	.	.	.	V	K	L	E	E	F	G	R	P	K	I	D	G	E
Query Conservation																		.																																															.	.	.
Alig confidence																		.																																															.	.	.
Template Conservation
Template Sequence		V	L	K	Y	P	L	L	L	R	E	L	F	A	L	T	D	A	E	S	E	E	H	Y	H	L	D	V	A	I	K	T	X	N	K	V	A	S	H	I	N	E	X	Q	K	I	H	E	E	F	G	A	V	F	D	Q	L	I	A	E	Q	T	G	E	K	K	E	V	A	D	L	S	X	G	D	L	L	L	H	T	S
Template Known Secondary structure			T	T											T	S		T	T	S																																							T	T		S	S		S		S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		1193	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.
		412	.	.	.	.	.						.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.															.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	V	R	S	I	.	.	.	.	.	V	N	H	T	K	Q	D	R	Y	L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	L	K	E	I	I	E	L	L	F	H	K	M	T	D	D	P	M	N	N	K	D	V	K	K	S	H	G
Query Conservation								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	W	L	N	P	P	A	S	L	G	K	W	K	K	E	P	E	L	A	A	F	V	F	K	T	A	V	V	L	V	Y	K	D	G	S	K	Q	K	K	K	L	V	G	S	H	R	L	S	I	Y	E	E	W	D	P	F	R	F	R	H	X	I	P	T	E	A	L	Q	V	R	A	L	P	S	A	D	A	E	A
Template Known Secondary structure					S	S							T	T		S	S									T	T												S			S	S				T	T	T	T		S	S		S		S									G	G	G									T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1273	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.
		473	.	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		K	M	W	S	Y	G	F	Y	L	I	H	L	.	.	.	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q	F	E	M	A	M	S	N
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		N	A	V	C	E	I	V	H	V	K	S	E	S	E	G	R	P	E	R	V	F	H	L	C	C	S	S	P	E	S	R	K	D	F	L	K	S	V	H	S	I	L	R	D
Template Known Secondary structure												B	T	G	G	G	B										S	S
Template Predicted Secondary structure
Template SS confidence
		1353	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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