Job Description A0AVK6 Confidence 44.67% Date Fri May 25 10:06:19 BST 2012 Rank 177 Aligned Residues 161 % Identity 13% Template c3h7nD_ PDB info PDB header:structural protein Chain: D: PDB Molecule:nucleoporin nup120; PDBTitle: structure of nup120 Resolution 3.00 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		I	V	N	V	L	E	S	L	H	M	V	S	R	L	A	K	N	R	Y	T	W	H	G	R	H	N	L	N	K	T	L	G	T	L	K	S	I	G	E	E	N	K	.	Y	A	E	Q	I	M	M	I	K	K	K	E	Y	E	Q	E	F	D	F	I	K	S	Y	S	I	E	D	H	I	I	K	S	N	T	G	P	N
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		A	Q	Q	I	L	S	E	N	K	I	I	M	A	H	N	E	D	E	E	Y	L	A	N	L	E	T	I	L	R	D	V	K	T	A	F	N	E	A	S	S	I	T	L	Y	G	D	E	I	I	L	V	N	C	F	Q	P	Y	N	H	S	L	Y	K	L	N	T	T	V	E	N	W	F	Y	N	M	H	S	E	T	D
Template Known Secondary structure									T	T					S	T	T																				T				B			B	S	S	S	S							S	S	T	T																	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		G	H	P	D	M	C	F	V	E	L	P	G	V	E	F	R	A	A	S	V	N	S	R	K	D	K	S	L	R	V	M	S	Q	K	F	V	M	L	F	L	V	S	T	P	Q	I	V	S	L	E	V	A	A	K	I	L	I	G	E	D	H	V	E	D	L	D	K	S	K	F	K	T	K	I	R	R	L	.	.	Y
Query Conservation																																																																															.	.
Alig confidence																						.	.	.	.	.																																																					.	.
Template Conservation																						.	.	.	.	.
Template Sequence		G	S	E	L	F	K	Y	L	R	T	L	N	G	F	A	S	T	L	S	N	.	.	.	.	.	D	V	L	R	S	I	S	K	K	F	L	D	I	I	T	G	E	L	P	D	S	M	T	T	V	E	K	F	T	D	I	F	K	N	C	L	E	N	Q	F	E	I	T	N	L	K	I	L	F	D	E	L	N	S	F
Template Known Secondary structure		S															T	T	S			.	.	.	.	.																S	S	S		S	S	S		T	T	T								T	T	T	T	T	S	S														T	S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.						.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	N	V	L	S	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	P	V	V	L	N	D	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions