Job Description Q92569 Confidence 93.95% Date Fri May 25 09:38:24 BST 2012 Rank 136 Aligned Residues 155 % Identity 12% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	Q	D	Q	L	V	K	E	D	N	I	D	A	V	G	K	K	L	Q	E	Y	H	S	Q	Y	Q	E	K	S	K	E	Y	D	R	L	Y	E	E	Y	T	R	T	S	Q	E	I	Q	M	K	R	T	A	I	E	A	F	N	E	T	I	K	I	F	E	E	Q	C	H	T	Q	E	Q	H	S	K	E	Y	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T
Template Known Secondary structure		S							S	S		S	S																																														S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		R	F	R	R	E	G	N	E	K	E	I	E	R	I	M	M	N	Y	D	K	L	K	S	R	L	G	E	I	H	.	.	.	.	.	.	D	S	K	M	R	L	E	Q	D	L	K	N	Q	A	L	D	N	R	E	I	D	K	K	M	N	S	I	K	P	D	L	I	Q	L	R	K	I	R	D	Q	H	L	V	W	L
Query Conservation																															.	.	.	.	.	.
Alig confidence						.	.																								.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		K	V	Q	E	.	.	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q	N	K	C
Template Known Secondary structure						.	.																							S			S	S
Template Predicted Secondary structure						.	.
Template SS confidence
		614	.	.	.			.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		317	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		692	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions