Job Description Q9Y5R4 Confidence 99.78% Date Tue Apr 3 14:35:09 BST 2012 Rank 39 Aligned Residues 251 % Identity 17% Template c3v8vB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase l; PDBTitle: crystal structure of bifunctional methyltransferase ycby (rlmlk) from2 escherichia coli, sam binding Resolution 2.60 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	G	L	S	S	A	I	E	L	V	S	H	W	T	G	V	F	E	K	R	G	I	P	E	A	R	E	S	S	E	Y	I	V	A	H	V	L	G	A	K	T	F	Q	S	L	R	P	A	L	W	T	Q	P	L	T	S	Q	Q	L	Q	C	I	R	E	L	S	S	R	R	L	Q	R	M	P	V	Q	Y	I	L	.
Query Conservation																																																																																	.
Alig confidence																		.	.	.																																																													.
Template Conservation																		.	.	.
Template Sequence		N	R	L	R	K	N	L	K	K	F	E	K	W	A	R	Q	.	.	.	E	G	I	E	C	Y	R	L	Y	D	A	D	L	P	E	Y	N	V	A	V	D	R	Y	A	D	W	V	V	V	Q	E	Y	A	H	K	A	R	Q	R	L	F	D	I	I	A	A	T	I	S	V	L	G	I	A	P	N	K	L	V	L	K
Template Known Secondary structure																		.	.	.	S		B	S							S		S	T	T	S								T	T																											T			G	G	G
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.				.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
														115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		T	R	K	G	E	F	L	E	V	T	E	Y	N	A	H	L	W	V	N	L	T	D	Y	L	D	T	G	L	F	L	D	H	R	I	A	R	R	M	L	G	Q	M	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	D	F	L	N	L	F	S	Y	T	G	S	A	T	V	H	A	G	L	G	.	G
Template Known Secondary structure													T	T							S	S	S	S	S	S		S			G	G	G												T	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S		T	T										T	.	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.														.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.		.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	.	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P
Query Conservation																														.
Alig confidence																														.												.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	S	T	T	T	V	D	M	S	R	T	Y	L	E	W	A	E	R	N	L	R	L	N	G	L	T	G	R	A	H	R	L	I	Q	A	D	C	L	A	.	.	.	W	L	R	E	A	N	E	Q	F	D	L	I	F	I	D	P	P	T	F	S	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S							S														T	T	T			S	T	T						S					.	.	.																		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600				.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	.	.	.	.	.	R	D	F	C	G	R	P	R	F
Query Conservation																																																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																											.	.	.										.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																											.	.	.
Template Sequence		.	.	.	.	.	.	F	D	V	Q	R	D	H	L	A	L	M	K	D	L	K	R	L	L	R	A	G	G	T	I	M	F	S	N	N	K	R	G	F	R	M	D	L	D	G	L	A	K	.	.	.	L	G	L	K	A	Q	E	I	T	Q	K	T	L	S	Q	D	F	A	R	N	R	Q	I
Template Known Secondary structure		.	.	.	.	.	.																															T	T									T	T	.	.	.	T	T							T	T	T	T			S	S	S	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.																																											.	.	.
Template SS confidence
								629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670				.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions