Job Description Q9Y5R4 Confidence 83.39% Date Tue Apr 3 14:35:09 BST 2012 Rank 373 Aligned Residues 86 % Identity 17% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	.	.	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D
Query Conservation																								.	.
Alig confidence																								.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	.	R	A
Template Known Secondary structure					G	G	G				G	G	G																S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G	G										.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240																		.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.		1260	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	Y	A	D	R	T	S	E	R	V	I	C	V	L	G	R	K	F	R	S	S	R	A	L	K
Template Known Secondary structure						S												T	T
Template Predicted Secondary structure
Template SS confidence
		1262	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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