Job Description Q9Y5R4 Confidence 98.03% Date Tue Apr 3 14:35:09 BST 2012 Rank 304 Aligned Residues 160 % Identity 16% Template c3swrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin Resolution 2.49 Å

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		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.													.	220	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	.	.	.	.	.	.	.	.	.	.	.	.	M	T	S	E	R
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		I	K	L	P	K	L	R	T	L	D	V	F	S	G	C	G	G	L	S	E	G	F	H	Q	A	G	I	S	D	T	L	W	A	I	E	M	W	D	P	A	A	Q	A	F	R	L	N	.	.	.	.	.	.	N	P	G	S	T	V	F	T	E	D	C	N	I	L	L	K	L	V	M	A	G	E	T	T	N	S	R
Template Known Secondary structure													S		T	T	S										T	S									S	S											.	.	.	.	.	.		T	T	S					S												T		S	B		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		1134	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180							.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.
Query Sequence		S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	.	.	.	.	.	D	P	R
Query Conservation																																																																										.	.	.	.	.
Alig confidence																																				.							.	.	.	.	.	.	.	.	.											.					.							.	.	.	.	.
Template Conservation																																				.							.	.	.	.	.	.	.	.	.											.					.
Template Sequence		G	Q	R	L	P	Q	K	G	D	V	E	M	L	C	G	G	P	P	C	Q	G	F	S	G	M	N	R	F	N	S	R	T	Y	S	.	K	F	K	N	S	L	.	.	.	.	.	.	.	.	.	V	V	S	F	L	S	Y	C	D	Y	.	Y	R	P	R	.	F	F	L	L	E	N	V	R	N	F	V	S	F	K
Template Known Secondary structure				B				T	T	T		S									T	T			S	S	S									.			T	T	S		.	.	.	.	.	.	.	.	.											.				S	.								G	G	G	G	T	T	G
Template Predicted Secondary structure																																				.							.	.	.	.	.	.	.	.	.											.					.
Template SS confidence
		1208	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.		.	.	.	.	.	.										.	.	1250	.	.	.	.	.	.	.		.	.	1260	.		.	.	.	.	.	.	.	.	1270	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.							.	.	.	.	330	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	C	.	.	.	.	.	.	G	R	P	R	F	L	H	I
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	M	V	L	K	L	T	L	R	C	L	V	R	M	G	Y	Q	C	T	F	G	V	L	Q	A	G	Q	Y	G	V	A	Q	T	R	R	R	A	I	I	L
Template Known Secondary structure		G	G														T										G	G	G	G	T		S	B
Template Predicted Secondary structure
Template SS confidence
		1276	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions