Job Description Q9Y5R4 Confidence 84.86% Date Tue Apr 3 14:35:09 BST 2012 Rank 370 Aligned Residues 150 % Identity 17% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.													.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.												.	.	200	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Query Sequence		S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	S	R	V	I	A	V	D	.	.	.	K	R	E	A	A	I	S	.	.	.	.	.	.	.	.	.	.	.	L	T	H	E	N	A	Q	R	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.										.	.	.								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation
Template Sequence		P	Q	Q	S	C	I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P	L	P	L
Template Known Secondary structure			S	S										T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
										206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	.	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	.	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H
Query Conservation		.	.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.	.																						.															.				.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.				.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	C	H	R	I	L	L	A	D	G	A	I	T	L	D	L	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	.	F	A	P	.	.	.	.	.	.	.	N	P	D	X	W	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q
Template Known Secondary structure		S								T	T	T	T								S						G	G	G			G	G	G	T	T									S	.	S			.	.	.	.	.	.	.			T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.				.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.								.	.	.	.	.	.																		.	190
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	C	G	R	P	R	F	L	H	I	R	R	S	G	P
Query Conservation
Alig confidence																			.	.	.														.	.	.				.
Template Conservation																			.	.	.														.	.	.				.
Template Sequence		L	F	N	A	X	A	R	X	T	R	P	G	G	T	F	S	T	.	.	.	F	T	A	A	G	F	V	R	R	G	L	Q	Q	.	.	.	A	G	F	.	N	V	T	K	V	K	G	F	G	Q	K	R	E	X	L	T	G	T	L	P	Q	Q
Template Known Secondary structure																			.	.	.	S													.	.	.	T	T		.								S	S	S	S										S
Template Predicted Secondary structure																			.	.	.														.	.	.				.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions