Job Description Q9Y5R4 Confidence 99.72% Date Tue Apr 3 14:35:09 BST 2012 Rank 67 Aligned Residues 139 % Identity 13% Template c3p2kA_ PDB info PDB header:transferase Chain: A: PDB Molecule:16s rrna methylase; PDBTitle: structure of an antibiotic related methyltransferase Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	.	.	.	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.													.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		Q	F	D	R	V	H	I	D	L	G	T	G	D	G	R	N	I	Y	K	L	A	I	N	D	Q	N	T	F	Y	I	G	I	D	P	V	K	E	N	L	F	D	I	S	K	K	I	I	K	K	P	S	K	G	G	L	S	N	V	V	F	V	I	A	A	A	E	S	.	.	.	L	P	F	E	L	K	N	I	A	D
Template Known Secondary structure		T	S	S							T		T	T	S											T	T								S		G	G	G	G								T	S		G	G	G	T			S	S								T	T	S	.	.	.			G	G	G	T	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	S	I	L	F	P	W	G	T	L	L	E	Y	V	I	K	P	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	L	S	N	V	A	D	L	A	K	K	E	A	H	F	E	F	V	T	T	Y	K	A	Y	F	L	S	E	Q	Y	K	A	E	L	S	N	S	G
Template Known Secondary structure							S											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T																			S									T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		315	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	V	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	I	D	D	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions